High-quality genome sequence and description of Paenibacillus dakarensis sp. nov.

High-quality genome sequence and description of Paenibacillus dakarensis sp. nov.

Strain FF9T was isolated in Dakar (Senegal) from a blood-culture taken from a 16-month-old child. MALDI-TOF analysis did not allow for identification. After sequencing, strain FF9T exhibited 98.18% similarity with the 16SrRNA sequence of Paenibacillus uliginis. A polyphasic study of phenotypic and g...

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Main Authors: C.I. Lo, S.A. Sankar, B. Fall, B. Sambe-Ba, O. Mediannikov, C. Robert, N. Faye, B. Wade, D. Raoult, P.-E. Fournier, F. Fenollar
Format: Article
Language:English
Published: Elsevier 2016-03-01
Series:New Microbes and New Infections
Subjects:
Culturomics
genome
Paenibacillus dakarensis
taxono-genomics
Online Access:http://www.sciencedirect.com/science/article/pii/S2052297516000135
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spelling doaj-8724b94ca24943c8bb7da463b1e1a4592020-11-25T01:34:30ZengElsevierNew Microbes and New Infections2052-29752016-03-0110C13214110.1016/j.nmni.2016.01.011High-quality genome sequence and description of Paenibacillus dakarensis sp. nov.C.I. Lo0S.A. Sankar1B. Fall2B. Sambe-Ba3O. Mediannikov4C. Robert5N. Faye6B. Wade7D. Raoult8P.-E. Fournier9F. Fenollar10Aix-Marseille Université, URMITE, UM63, CNRS 7278, IRD 198, Inserm U1095, Faculté de médecine, Marseille, FranceAix-Marseille Université, URMITE, UM63, CNRS 7278, IRD 198, Inserm U1095, Faculté de médecine, Marseille, FranceHôpital Principal de Dakar, SenegalHôpital Principal de Dakar, SenegalAix-Marseille Université, URMITE, UM63, CNRS 7278, IRD 198, Inserm U1095, Faculté de médecine, Marseille, FranceAix-Marseille Université, URMITE, UM63, CNRS 7278, IRD 198, Inserm U1095, Faculté de médecine, Marseille, FranceUniversité Cheikh Anta Diop de Dakar, Laboratoire de Parasitologie générale, Dakar, SenegalHôpital Principal de Dakar, SenegalAix-Marseille Université, URMITE, UM63, CNRS 7278, IRD 198, Inserm U1095, Faculté de médecine, Marseille, FranceAix-Marseille Université, URMITE, UM63, CNRS 7278, IRD 198, Inserm U1095, Faculté de médecine, Marseille, FranceAix-Marseille Université, URMITE, UM63, CNRS 7278, IRD 198, Inserm U1095, Faculté de médecine, Marseille, FranceStrain FF9T was isolated in Dakar (Senegal) from a blood-culture taken from a 16-month-old child. MALDI-TOF analysis did not allow for identification. After sequencing, strain FF9T exhibited 98.18% similarity with the 16SrRNA sequence of Paenibacillus uliginis. A polyphasic study of phenotypic and genomic analyses showed that strain FF9T is Gram variable, catalase-positive, and presents a genome of 4,569,428 bp (one chromosome but no plasmid) with 4,427genes (4,352 protein-coding and 75 RNA genes (including 3 rRNA operons). The G+C content is 45.7%. On the basis of these genomic and phenotypic data analyses, we propose the creation of Paenibacillus dakarensis strain FF9T.http://www.sciencedirect.com/science/article/pii/S2052297516000135CulturomicsgenomePaenibacillus dakarensistaxono-genomics
collection DOAJ
language English
format Article
sources DOAJ
author C.I. Lo
S.A. Sankar
B. Fall
B. Sambe-Ba
O. Mediannikov
C. Robert
N. Faye
B. Wade
D. Raoult
P.-E. Fournier
F. Fenollar
spellingShingle C.I. Lo
S.A. Sankar
B. Fall
B. Sambe-Ba
O. Mediannikov
C. Robert
N. Faye
B. Wade
D. Raoult
P.-E. Fournier
F. Fenollar
High-quality genome sequence and description of Paenibacillus dakarensis sp. nov.
New Microbes and New Infections
Culturomics
genome
Paenibacillus dakarensis
taxono-genomics
author_facet C.I. Lo
S.A. Sankar
B. Fall
B. Sambe-Ba
O. Mediannikov
C. Robert
N. Faye
B. Wade
D. Raoult
P.-E. Fournier
F. Fenollar
author_sort C.I. Lo
title High-quality genome sequence and description of Paenibacillus dakarensis sp. nov.
title_short High-quality genome sequence and description of Paenibacillus dakarensis sp. nov.
title_full High-quality genome sequence and description of Paenibacillus dakarensis sp. nov.
title_fullStr High-quality genome sequence and description of Paenibacillus dakarensis sp. nov.
title_full_unstemmed High-quality genome sequence and description of Paenibacillus dakarensis sp. nov.
title_sort high-quality genome sequence and description of paenibacillus dakarensis sp. nov.
publisher Elsevier
series New Microbes and New Infections
issn 2052-2975
publishDate 2016-03-01
description Strain FF9T was isolated in Dakar (Senegal) from a blood-culture taken from a 16-month-old child. MALDI-TOF analysis did not allow for identification. After sequencing, strain FF9T exhibited 98.18% similarity with the 16SrRNA sequence of Paenibacillus uliginis. A polyphasic study of phenotypic and genomic analyses showed that strain FF9T is Gram variable, catalase-positive, and presents a genome of 4,569,428 bp (one chromosome but no plasmid) with 4,427genes (4,352 protein-coding and 75 RNA genes (including 3 rRNA operons). The G+C content is 45.7%. On the basis of these genomic and phenotypic data analyses, we propose the creation of Paenibacillus dakarensis strain FF9T.
topic Culturomics
genome
Paenibacillus dakarensis
taxono-genomics
url http://www.sciencedirect.com/science/article/pii/S2052297516000135
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