Characterization of the mitochondrial genome of Arge bella Wei & Du sp. nov. (Hymenoptera: Argidae)

We describe Arge bella Wei & Du sp. nov., a large and beautiful species of Argidae from south China, and report its mitochondrial genome based on high-throughput sequencing data. We present the gene order, nucleotide composition of protein-coding genes (PCGs), and the secondary structures of RNA...

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Main Authors: Shiyu Du, Gengyun Niu, Tommi Nyman, Meicai Wei
Format: Article
Language:English
Published: PeerJ Inc. 2018-12-01
Series:PeerJ
Subjects:
Online Access:https://peerj.com/articles/6131.pdf
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spelling doaj-8c4c44c8cbfa402b9996b5af6c641f3d2020-11-25T01:04:20ZengPeerJ Inc.PeerJ2167-83592018-12-016e613110.7717/peerj.6131Characterization of the mitochondrial genome of Arge bella Wei & Du sp. nov. (Hymenoptera: Argidae)Shiyu Du0Gengyun Niu1Tommi Nyman2Meicai Wei3Central South University of Forestry and Technology, Key Laboratory of Cultivation and Protection for Non-Wood Forest Trees (Central South University of Forestry and Technology), Ministry of Education, Changsha, Hunan, ChinaJiangxi Normal University, Life Science College, Nanchang, Jiangxi, ChinaNorwegian Institute of Bioeconomy Research, Department of Ecosystems in the Barents Region, Svanhovd Research Station, Svanvik, NorwayCentral South University of Forestry and Technology, Key Laboratory of Cultivation and Protection for Non-Wood Forest Trees (Central South University of Forestry and Technology), Ministry of Education, Changsha, Hunan, ChinaWe describe Arge bella Wei & Du sp. nov., a large and beautiful species of Argidae from south China, and report its mitochondrial genome based on high-throughput sequencing data. We present the gene order, nucleotide composition of protein-coding genes (PCGs), and the secondary structures of RNA genes. The nearly complete mitochondrial genome of A. bella has a length of 15,576 bp and a typical set of 37 genes (22 tRNAs, 13 PCGs, and 2 rRNAs). Three tRNAs are rearranged in the A. bella mitochondrial genome as compared to the ancestral type in insects: trnM and trnQ are shuffled, while trnW is translocated from the trnW-trnC-trnY cluster to a location downstream of trnI. All PCGs are initiated by ATN codons, and terminated with TAA, TA or T as stop codons. All tRNAs have a typical cloverleaf secondary structure, except for trnS1. H821 of rrnS and H976 of rrnL are redundant. A phylogenetic analysis based on mitochondrial genome sequences of A. bella, 21 other symphytan species, two apocritan representatives, and four outgroup taxa supports the placement of Argidae as sister to the Pergidae within the symphytan superfamily Tenthredinoidea.https://peerj.com/articles/6131.pdfArge bellaSecondary structureMitochondrial genomeNew speciesTaxonomyCladistic analysis
collection DOAJ
language English
format Article
sources DOAJ
author Shiyu Du
Gengyun Niu
Tommi Nyman
Meicai Wei
spellingShingle Shiyu Du
Gengyun Niu
Tommi Nyman
Meicai Wei
Characterization of the mitochondrial genome of Arge bella Wei & Du sp. nov. (Hymenoptera: Argidae)
PeerJ
Arge bella
Secondary structure
Mitochondrial genome
New species
Taxonomy
Cladistic analysis
author_facet Shiyu Du
Gengyun Niu
Tommi Nyman
Meicai Wei
author_sort Shiyu Du
title Characterization of the mitochondrial genome of Arge bella Wei & Du sp. nov. (Hymenoptera: Argidae)
title_short Characterization of the mitochondrial genome of Arge bella Wei & Du sp. nov. (Hymenoptera: Argidae)
title_full Characterization of the mitochondrial genome of Arge bella Wei & Du sp. nov. (Hymenoptera: Argidae)
title_fullStr Characterization of the mitochondrial genome of Arge bella Wei & Du sp. nov. (Hymenoptera: Argidae)
title_full_unstemmed Characterization of the mitochondrial genome of Arge bella Wei & Du sp. nov. (Hymenoptera: Argidae)
title_sort characterization of the mitochondrial genome of arge bella wei & du sp. nov. (hymenoptera: argidae)
publisher PeerJ Inc.
series PeerJ
issn 2167-8359
publishDate 2018-12-01
description We describe Arge bella Wei & Du sp. nov., a large and beautiful species of Argidae from south China, and report its mitochondrial genome based on high-throughput sequencing data. We present the gene order, nucleotide composition of protein-coding genes (PCGs), and the secondary structures of RNA genes. The nearly complete mitochondrial genome of A. bella has a length of 15,576 bp and a typical set of 37 genes (22 tRNAs, 13 PCGs, and 2 rRNAs). Three tRNAs are rearranged in the A. bella mitochondrial genome as compared to the ancestral type in insects: trnM and trnQ are shuffled, while trnW is translocated from the trnW-trnC-trnY cluster to a location downstream of trnI. All PCGs are initiated by ATN codons, and terminated with TAA, TA or T as stop codons. All tRNAs have a typical cloverleaf secondary structure, except for trnS1. H821 of rrnS and H976 of rrnL are redundant. A phylogenetic analysis based on mitochondrial genome sequences of A. bella, 21 other symphytan species, two apocritan representatives, and four outgroup taxa supports the placement of Argidae as sister to the Pergidae within the symphytan superfamily Tenthredinoidea.
topic Arge bella
Secondary structure
Mitochondrial genome
New species
Taxonomy
Cladistic analysis
url https://peerj.com/articles/6131.pdf
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AT gengyunniu characterizationofthemitochondrialgenomeofargebellaweiduspnovhymenopteraargidae
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