Viral Metagenome-Based Precision Surveillance of Pig Population at Large Scale Reveals Viromic Signatures of Sample Types and Influence of Farming Management on Pig Virome

Viral Metagenome-Based Precision Surveillance of Pig Population at Large Scale Reveals Viromic Signatures of Sample Types and Influence of Farming Management on Pig Virome

Pigs are deeply involved in human lives; hence, their viruses are associated with public health. Here, we established the most comprehensive virome of healthy piglets to date, which provides a viromic baseline of weaned pigs for disease prevention and control, highlighting that longitudinal viromic...

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Main Authors: Biao He, Wenjie Gong, Xiaomin Yan, Zihan Zhao, Ling’en Yang, Zhizhou Tan, Lin Xu, Aiwei Zhu, Jianing Zhang, Jihong Rao, Xinglong Yu, Jianfeng Jiang, Zongji Lu, Yifang Zhang, Jianmin Wu, Yong Li, Yuxiang Shi, Qing Jiang, Xiwen Chen, Changchun Tu
Format: Article
Language:English
Published: American Society for Microbiology 2021-06-01
Series:mSystems
Online Access:https://journals.asm.org/doi/10.1128/mSystems.00420-21
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language English
format Article
sources DOAJ
author Biao He
Wenjie Gong
Xiaomin Yan
Zihan Zhao
Ling’en Yang
Zhizhou Tan
Lin Xu
Aiwei Zhu
Jianing Zhang
Jihong Rao
Xinglong Yu
Jianfeng Jiang
Zongji Lu
Yifang Zhang
Jianmin Wu
Yong Li
Yuxiang Shi
Qing Jiang
Xiwen Chen
Changchun Tu
spellingShingle Biao He
Wenjie Gong
Xiaomin Yan
Zihan Zhao
Ling’en Yang
Zhizhou Tan
Lin Xu
Aiwei Zhu
Jianing Zhang
Jihong Rao
Xinglong Yu
Jianfeng Jiang
Zongji Lu
Yifang Zhang
Jianmin Wu
Yong Li
Yuxiang Shi
Qing Jiang
Xiwen Chen
Changchun Tu
Viral Metagenome-Based Precision Surveillance of Pig Population at Large Scale Reveals Viromic Signatures of Sample Types and Influence of Farming Management on Pig Virome
mSystems
author_facet Biao He
Wenjie Gong
Xiaomin Yan
Zihan Zhao
Ling’en Yang
Zhizhou Tan
Lin Xu
Aiwei Zhu
Jianing Zhang
Jihong Rao
Xinglong Yu
Jianfeng Jiang
Zongji Lu
Yifang Zhang
Jianmin Wu
Yong Li
Yuxiang Shi
Qing Jiang
Xiwen Chen
Changchun Tu
author_sort Biao He
title Viral Metagenome-Based Precision Surveillance of Pig Population at Large Scale Reveals Viromic Signatures of Sample Types and Influence of Farming Management on Pig Virome
title_short Viral Metagenome-Based Precision Surveillance of Pig Population at Large Scale Reveals Viromic Signatures of Sample Types and Influence of Farming Management on Pig Virome
title_full Viral Metagenome-Based Precision Surveillance of Pig Population at Large Scale Reveals Viromic Signatures of Sample Types and Influence of Farming Management on Pig Virome
title_fullStr Viral Metagenome-Based Precision Surveillance of Pig Population at Large Scale Reveals Viromic Signatures of Sample Types and Influence of Farming Management on Pig Virome
title_full_unstemmed Viral Metagenome-Based Precision Surveillance of Pig Population at Large Scale Reveals Viromic Signatures of Sample Types and Influence of Farming Management on Pig Virome
title_sort viral metagenome-based precision surveillance of pig population at large scale reveals viromic signatures of sample types and influence of farming management on pig virome
publisher American Society for Microbiology
series mSystems
issn 2379-5077
publishDate 2021-06-01
description Pigs are deeply involved in human lives; hence, their viruses are associated with public health. Here, we established the most comprehensive virome of healthy piglets to date, which provides a viromic baseline of weaned pigs for disease prevention and control, highlighting that longitudinal viromic monitoring is needed to better understand the dynamics of the virome in pig development and disease occurrence.
url https://journals.asm.org/doi/10.1128/mSystems.00420-21
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spelling doaj-8e1cff9f5ffc4c6db41b20f29cf367092021-09-21T18:52:40ZengAmerican Society for MicrobiologymSystems2379-50772021-06-016310.1128/mSystems.00420-21Viral Metagenome-Based Precision Surveillance of Pig Population at Large Scale Reveals Viromic Signatures of Sample Types and Influence of Farming Management on Pig ViromeBiao He0https://orcid.org/0000-0001-7587-152XWenjie Gong1https://orcid.org/0000-0002-7239-7188Xiaomin Yan2Zihan Zhao3Ling’en Yang4Zhizhou Tan5Lin Xu6Aiwei Zhu7Jianing Zhang8Jihong Rao9Xinglong Yu10Jianfeng Jiang11Zongji Lu12Yifang Zhang13Jianmin Wu14Yong Li15Yuxiang Shi16Qing Jiang17Xiwen Chen18Changchun Tu19https://orcid.org/0000-0002-8134-7502Key Laboratory of Jilin Province for Zoonosis Prevention and Control, Institute of Military Veterinary Medicine, Academy of Military Medical Sciences, Changchun, Jilin Province, ChinaKey Laboratory of Jilin Province for Zoonosis Prevention and Control, Institute of Military Veterinary Medicine, Academy of Military Medical Sciences, Changchun, Jilin Province, ChinaKey Laboratory of Jilin Province for Zoonosis Prevention and Control, Institute of Military Veterinary Medicine, Academy of Military Medical Sciences, Changchun, Jilin Province, ChinaKey Laboratory of Jilin Province for Zoonosis Prevention and Control, Institute of Military Veterinary Medicine, Academy of Military Medical Sciences, Changchun, Jilin Province, ChinaKey Laboratory of Jilin Province for Zoonosis Prevention and Control, Institute of Military Veterinary Medicine, Academy of Military Medical Sciences, Changchun, Jilin Province, ChinaKey Laboratory of Jilin Province for Zoonosis Prevention and Control, Institute of Military Veterinary Medicine, Academy of Military Medical Sciences, Changchun, Jilin Province, ChinaKey Laboratory of Jilin Province for Zoonosis Prevention and Control, Institute of Military Veterinary Medicine, Academy of Military Medical Sciences, Changchun, Jilin Province, ChinaKey Laboratory of Jilin Province for Zoonosis Prevention and Control, Institute of Military Veterinary Medicine, Academy of Military Medical Sciences, Changchun, Jilin Province, ChinaKey Laboratory of Jilin Province for Zoonosis Prevention and Control, Institute of Military Veterinary Medicine, Academy of Military Medical Sciences, Changchun, Jilin Province, ChinaKey Laboratory of Jilin Province for Zoonosis Prevention and Control, Institute of Military Veterinary Medicine, Academy of Military Medical Sciences, Changchun, Jilin Province, ChinaCollege of Veterinary Medicine, Hunan Agricultural University, Changsha, Hunan Province, ChinaKey Laboratory of Jilin Province for Zoonosis Prevention and Control, Institute of Military Veterinary Medicine, Academy of Military Medical Sciences, Changchun, Jilin Province, ChinaCollege of Life Sciences and Engineering, Foshan University, Foshan, Guangdong Province, ChinaCollege of Veterinary Medicine, Yunnan Agricultural University, Kunming, Yunnan Province, ChinaGuangxi Key Laboratory of Veterinary Biotechnology, Guangxi Veterinary Research Institute, Nanning, Guangxi Zhuang Autonomous Region, ChinaCollege of Life Sciences, Ningxia University, Yinchuan, Ningxia Hui Autonomous Region, ChinaCollege of Life Sciences and Food Engineering, Hebei University of Engineering, Handan, Hebei Province, ChinaCenter of Animal Disease Prevention and Control of Rongchang District, Rongchang, Chongqing Municipality, ChinaAnimal Disease Prevention and Control & Healthy Breeding Engineering Technology Research Center, Mianyang Normal University, Mianyang, Sichuan Province, ChinaKey Laboratory of Jilin Province for Zoonosis Prevention and Control, Institute of Military Veterinary Medicine, Academy of Military Medical Sciences, Changchun, Jilin Province, China Pigs are deeply involved in human lives; hence, their viruses are associated with public health. Here, we established the most comprehensive virome of healthy piglets to date, which provides a viromic baseline of weaned pigs for disease prevention and control, highlighting that longitudinal viromic monitoring is needed to better understand the dynamics of the virome in pig development and disease occurrence.https://journals.asm.org/doi/10.1128/mSystems.00420-21

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