Critical Torque for Kink Formation in Double-Stranded DNA

We measure the bending energy of double-stranded DNA in the nonlinear (sharply bent) regime. The measurements are obtained from the melting curves of stressed DNA ring molecules. The nonlinear elastic behavior is captured by a single parameter: the critical torque τ_{c} at which the molecule develop...

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Main Authors: Hao Qu, Yong Wang, Chiao-Yu Tseng, Giovanni Zocchi
Format: Article
Language:English
Published: American Physical Society 2011-11-01
Series:Physical Review X
Online Access:http://doi.org/10.1103/PhysRevX.1.021008
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spelling doaj-903eab7e24234a4fabad24a9f9cf63f92020-11-24T22:41:36ZengAmerican Physical SocietyPhysical Review X2160-33082011-11-011202100810.1103/PhysRevX.1.021008Critical Torque for Kink Formation in Double-Stranded DNAHao QuYong WangChiao-Yu TsengGiovanni ZocchiWe measure the bending energy of double-stranded DNA in the nonlinear (sharply bent) regime. The measurements are obtained from the melting curves of stressed DNA ring molecules. The nonlinear elastic behavior is captured by a single parameter: the critical torque τ_{c} at which the molecule develops a kink. In this regime, the elastic energy is linear in the kink angle. This phenomenology is the same as for the previously reported case of nicked DNA. For the sequences examined, we find τ_{c}=31  pN×nm. This critical torque corresponds to a characteristic energy scale (π/2)τ_{c}=12  kT_{room} relevant for molecular biology processes associated with DNA bending.http://doi.org/10.1103/PhysRevX.1.021008
collection DOAJ
language English
format Article
sources DOAJ
author Hao Qu
Yong Wang
Chiao-Yu Tseng
Giovanni Zocchi
spellingShingle Hao Qu
Yong Wang
Chiao-Yu Tseng
Giovanni Zocchi
Critical Torque for Kink Formation in Double-Stranded DNA
Physical Review X
author_facet Hao Qu
Yong Wang
Chiao-Yu Tseng
Giovanni Zocchi
author_sort Hao Qu
title Critical Torque for Kink Formation in Double-Stranded DNA
title_short Critical Torque for Kink Formation in Double-Stranded DNA
title_full Critical Torque for Kink Formation in Double-Stranded DNA
title_fullStr Critical Torque for Kink Formation in Double-Stranded DNA
title_full_unstemmed Critical Torque for Kink Formation in Double-Stranded DNA
title_sort critical torque for kink formation in double-stranded dna
publisher American Physical Society
series Physical Review X
issn 2160-3308
publishDate 2011-11-01
description We measure the bending energy of double-stranded DNA in the nonlinear (sharply bent) regime. The measurements are obtained from the melting curves of stressed DNA ring molecules. The nonlinear elastic behavior is captured by a single parameter: the critical torque τ_{c} at which the molecule develops a kink. In this regime, the elastic energy is linear in the kink angle. This phenomenology is the same as for the previously reported case of nicked DNA. For the sequences examined, we find τ_{c}=31  pN×nm. This critical torque corresponds to a characteristic energy scale (π/2)τ_{c}=12  kT_{room} relevant for molecular biology processes associated with DNA bending.
url http://doi.org/10.1103/PhysRevX.1.021008
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