Whole-Genome Sequencing of <i>Corallococcus</i> sp. Strain EGB Reveals the Genetic Determinants Linking Taxonomy and Predatory Behavior

<i>Corallococcus</i> sp. strain EGB is a Gram-negative myxobacteria isolated from saline soil, and has considerable potential for the biocontrol of phytopathogenic fungi. However, the detailed mechanisms related to development and predatory behavior are unclear. To obtain a comprehensive...

Full description

Bibliographic Details
Main Authors: Yuqiang Zhao, Yanxin Wang, Chengyao Xia, Xu Li, Xianfeng Ye, Qiwen Fan, Yan Huang, Zhoukun Li, Cancan Zhu, Zhongli Cui
Format: Article
Language:English
Published: MDPI AG 2021-09-01
Series:Genes
Subjects:
Online Access:https://www.mdpi.com/2073-4425/12/9/1421
Description
Summary:<i>Corallococcus</i> sp. strain EGB is a Gram-negative myxobacteria isolated from saline soil, and has considerable potential for the biocontrol of phytopathogenic fungi. However, the detailed mechanisms related to development and predatory behavior are unclear. To obtain a comprehensive overview of genetic features, the genome of strain EGB was sequenced, annotated, and compared with 10 other <i>Corallococcus</i> species. The strain EGB genome was assembled as a single circular chromosome of 9.4 Mb with 7916 coding genes. Phylogenomics analysis showed that strain EGB was most closely related to <i>Corallococcus interemptor</i> AB047A, and it was inferred to be a novel species within the <i>Corallococcus</i> genus. Comparative genomic analysis revealed that the pan-genome of <i>Corallococcus</i> genus was large and open. Only a small proportion of genes were specific to strain EGB, and most of them were annotated as hypothetical proteins. Subsequent analyses showed that strain EGB produced abundant extracellular enzymes such as chitinases and β-(1,3)-glucanases, and proteases to degrade the cell-wall components of phytopathogenic fungi. In addition, 35 biosynthetic gene clusters potentially coding for antimicrobial compounds were identified in the strain EGB, and the majority of them were present in the dispensable pan-genome with unexplored metabolites. Other genes related to secretion and regulation were also explored for strain EGB. This study opens new perspectives in the greater understanding of the predatory behavior of strain EGB, and facilitates a potential application in the biocontrol of fungal plant diseases in the future.
ISSN:2073-4425