Systems Biology Approach to Model the Life Cycle of Trypanosoma cruzi.

Due to recent advances in reprogramming cell phenotypes, many efforts have been dedicated to developing reverse engineering procedures for the identification of gene regulatory networks that emulate dynamical properties associated with the cell fates of a given biological system. In this work, we pr...

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Main Authors: Alejandra Carrea, Luis Diambra
Format: Article
Language:English
Published: Public Library of Science (PLoS) 2016-01-01
Series:PLoS ONE
Online Access:http://europepmc.org/articles/PMC4709001?pdf=render
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spelling doaj-961dfe7acf694ceb95bee909894716be2020-11-25T02:52:37ZengPublic Library of Science (PLoS)PLoS ONE1932-62032016-01-01111e014694710.1371/journal.pone.0146947Systems Biology Approach to Model the Life Cycle of Trypanosoma cruzi.Alejandra CarreaLuis DiambraDue to recent advances in reprogramming cell phenotypes, many efforts have been dedicated to developing reverse engineering procedures for the identification of gene regulatory networks that emulate dynamical properties associated with the cell fates of a given biological system. In this work, we propose a systems biology approach for the reconstruction of the gene regulatory network underlying the dynamics of the Trypanosoma cruzi's life cycle. By means of an optimisation procedure, we embedded the steady state maintenance, and the known phenotypic transitions between these steady states in response to environmental cues, into the dynamics of a gene network model. In the resulting network architecture we identified a small subnetwork, formed by seven interconnected nodes, that controls the parasite's life cycle. The present approach could be useful for better understanding other single cell organisms with multiple developmental stages.http://europepmc.org/articles/PMC4709001?pdf=render
collection DOAJ
language English
format Article
sources DOAJ
author Alejandra Carrea
Luis Diambra
spellingShingle Alejandra Carrea
Luis Diambra
Systems Biology Approach to Model the Life Cycle of Trypanosoma cruzi.
PLoS ONE
author_facet Alejandra Carrea
Luis Diambra
author_sort Alejandra Carrea
title Systems Biology Approach to Model the Life Cycle of Trypanosoma cruzi.
title_short Systems Biology Approach to Model the Life Cycle of Trypanosoma cruzi.
title_full Systems Biology Approach to Model the Life Cycle of Trypanosoma cruzi.
title_fullStr Systems Biology Approach to Model the Life Cycle of Trypanosoma cruzi.
title_full_unstemmed Systems Biology Approach to Model the Life Cycle of Trypanosoma cruzi.
title_sort systems biology approach to model the life cycle of trypanosoma cruzi.
publisher Public Library of Science (PLoS)
series PLoS ONE
issn 1932-6203
publishDate 2016-01-01
description Due to recent advances in reprogramming cell phenotypes, many efforts have been dedicated to developing reverse engineering procedures for the identification of gene regulatory networks that emulate dynamical properties associated with the cell fates of a given biological system. In this work, we propose a systems biology approach for the reconstruction of the gene regulatory network underlying the dynamics of the Trypanosoma cruzi's life cycle. By means of an optimisation procedure, we embedded the steady state maintenance, and the known phenotypic transitions between these steady states in response to environmental cues, into the dynamics of a gene network model. In the resulting network architecture we identified a small subnetwork, formed by seven interconnected nodes, that controls the parasite's life cycle. The present approach could be useful for better understanding other single cell organisms with multiple developmental stages.
url http://europepmc.org/articles/PMC4709001?pdf=render
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AT luisdiambra systemsbiologyapproachtomodelthelifecycleoftrypanosomacruzi
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