Analysis of Diffracted Intensities from Finite Protein Crystals with Incomplete Unit Cells

Developments in experimental techniques in micro electron diffraction and serial X-ray crystallography provide the opportunity to collect diffraction data from protein nanocrystals. Incomplete unit cells on the surfaces of protein crystals can affect the distribution of diffracted intensities for cr...

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Main Authors: Sophie R. Williams, Ruben A. Dilanian, Harry M. Quiney, Andrew V. Martin
Format: Article
Language:English
Published: MDPI AG 2017-07-01
Series:Crystals
Subjects:
Online Access:https://www.mdpi.com/2073-4352/7/7/220
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spelling doaj-98c8a05c990b4b7b8075c2d6ee713f332020-11-24T22:16:36ZengMDPI AGCrystals2073-43522017-07-017722010.3390/cryst7070220cryst7070220Analysis of Diffracted Intensities from Finite Protein Crystals with Incomplete Unit CellsSophie R. Williams0Ruben A. Dilanian1Harry M. Quiney2Andrew V. Martin3ARC Centre of Excellence in Advanced Molecular Imaging, School of Physics, University of Melbourne, Parkville, Victoria 3010, AustraliaSchool of Physics, University of Melbourne, Parkville, Victoria 3010, AustraliaARC Centre of Excellence in Advanced Molecular Imaging, School of Physics, University of Melbourne, Parkville, Victoria 3010, AustraliaARC Centre of Excellence in Advanced Molecular Imaging, School of Physics, University of Melbourne, Parkville, Victoria 3010, AustraliaDevelopments in experimental techniques in micro electron diffraction and serial X-ray crystallography provide the opportunity to collect diffraction data from protein nanocrystals. Incomplete unit cells on the surfaces of protein crystals can affect the distribution of diffracted intensities for crystals with very high surface-to-volume ratios. The extraction of structure factors from diffraction data for such finite protein crystals sizes is considered here. A theoretical model for the continuous diffracted intensity distribution for data merged from finite crystals with two symmetry-related sub-units of the conventional unit cell is presented. This is used to extend a whole-pattern fitting technique to account for incomplete unit cells in the extraction of structure factor amplitudes. The accuracy of structure factor amplitudes found from this whole-pattern fitting technique and from an integration approach are evaluated.https://www.mdpi.com/2073-4352/7/7/220finite protein crystalsincomplete unit cellsstructure factor amplitudesmicro electron diffractionserial X-ray crystallographyXFELswhole-pattern fitting
collection DOAJ
language English
format Article
sources DOAJ
author Sophie R. Williams
Ruben A. Dilanian
Harry M. Quiney
Andrew V. Martin
spellingShingle Sophie R. Williams
Ruben A. Dilanian
Harry M. Quiney
Andrew V. Martin
Analysis of Diffracted Intensities from Finite Protein Crystals with Incomplete Unit Cells
Crystals
finite protein crystals
incomplete unit cells
structure factor amplitudes
micro electron diffraction
serial X-ray crystallography
XFELs
whole-pattern fitting
author_facet Sophie R. Williams
Ruben A. Dilanian
Harry M. Quiney
Andrew V. Martin
author_sort Sophie R. Williams
title Analysis of Diffracted Intensities from Finite Protein Crystals with Incomplete Unit Cells
title_short Analysis of Diffracted Intensities from Finite Protein Crystals with Incomplete Unit Cells
title_full Analysis of Diffracted Intensities from Finite Protein Crystals with Incomplete Unit Cells
title_fullStr Analysis of Diffracted Intensities from Finite Protein Crystals with Incomplete Unit Cells
title_full_unstemmed Analysis of Diffracted Intensities from Finite Protein Crystals with Incomplete Unit Cells
title_sort analysis of diffracted intensities from finite protein crystals with incomplete unit cells
publisher MDPI AG
series Crystals
issn 2073-4352
publishDate 2017-07-01
description Developments in experimental techniques in micro electron diffraction and serial X-ray crystallography provide the opportunity to collect diffraction data from protein nanocrystals. Incomplete unit cells on the surfaces of protein crystals can affect the distribution of diffracted intensities for crystals with very high surface-to-volume ratios. The extraction of structure factors from diffraction data for such finite protein crystals sizes is considered here. A theoretical model for the continuous diffracted intensity distribution for data merged from finite crystals with two symmetry-related sub-units of the conventional unit cell is presented. This is used to extend a whole-pattern fitting technique to account for incomplete unit cells in the extraction of structure factor amplitudes. The accuracy of structure factor amplitudes found from this whole-pattern fitting technique and from an integration approach are evaluated.
topic finite protein crystals
incomplete unit cells
structure factor amplitudes
micro electron diffraction
serial X-ray crystallography
XFELs
whole-pattern fitting
url https://www.mdpi.com/2073-4352/7/7/220
work_keys_str_mv AT sophierwilliams analysisofdiffractedintensitiesfromfiniteproteincrystalswithincompleteunitcells
AT rubenadilanian analysisofdiffractedintensitiesfromfiniteproteincrystalswithincompleteunitcells
AT harrymquiney analysisofdiffractedintensitiesfromfiniteproteincrystalswithincompleteunitcells
AT andrewvmartin analysisofdiffractedintensitiesfromfiniteproteincrystalswithincompleteunitcells
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