The expression of four pyridoxal kinase (PDXK) human variants in Drosophila impacts on genome integrity

Abstract In eukaryotes, pyridoxal kinase (PDXK) acts in vitamin B6 salvage pathway to produce pyridoxal 5′-phosphate (PLP), the active form of the vitamin, which is implicated in numerous crucial metabolic reactions. In Drosophila, mutations in the dPdxk gene cause chromosome aberrations (CABs) and...

Full description

Bibliographic Details
Main Authors: Elisa Mascolo, Anna Barile, Lorenzo Stufera Mecarelli, Noemi Amoroso, Chiara Merigliano, Arianna Massimi, Isabella Saggio, Torben Hansen, Angela Tramonti, Martino Luigi Di Salvo, Fabrizio Barbetti, Roberto Contestabile, Fiammetta Vernì
Format: Article
Language:English
Published: Nature Publishing Group 2019-10-01
Series:Scientific Reports
Online Access:https://doi.org/10.1038/s41598-019-50673-4
id doaj-98cbd0cfb2e64e8c8b4f5fe2009a0e66
record_format Article
spelling doaj-98cbd0cfb2e64e8c8b4f5fe2009a0e662020-12-08T06:47:33ZengNature Publishing GroupScientific Reports2045-23222019-10-019111010.1038/s41598-019-50673-4The expression of four pyridoxal kinase (PDXK) human variants in Drosophila impacts on genome integrityElisa Mascolo0Anna Barile1Lorenzo Stufera Mecarelli2Noemi Amoroso3Chiara Merigliano4Arianna Massimi5Isabella Saggio6Torben Hansen7Angela Tramonti8Martino Luigi Di Salvo9Fabrizio Barbetti10Roberto Contestabile11Fiammetta Vernì12Dipartimento di Biologia e Biotecnologie “C. Darwin” Sapienza Università di RomaDipartimento di Scienze Biochimiche “A. Rossi Fanelli”, Sapienza Università di Roma, Laboratory affiliated to Istituto Pasteur Italia-Fondazione Cenci BolognettiDipartimento di Biologia e Biotecnologie “C. Darwin” Sapienza Università di RomaDipartimento di Biologia e Biotecnologie “C. Darwin” Sapienza Università di RomaUniversity of Southern California, Molecular and Computational Biology DepartmentDipartimento di Medicina Sperimentale, Università di Roma Tor VergataDipartimento di Biologia e Biotecnologie “C. Darwin” Sapienza Università di RomaNovo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Sciences, University of CopenhagenDipartimento di Scienze Biochimiche “A. Rossi Fanelli”, Sapienza Università di Roma, Laboratory affiliated to Istituto Pasteur Italia-Fondazione Cenci BolognettiDipartimento di Scienze Biochimiche “A. Rossi Fanelli”, Sapienza Università di Roma, Laboratory affiliated to Istituto Pasteur Italia-Fondazione Cenci BolognettiDipartimento di Medicina Sperimentale, Università di Roma Tor VergataDipartimento di Scienze Biochimiche “A. Rossi Fanelli”, Sapienza Università di Roma, Laboratory affiliated to Istituto Pasteur Italia-Fondazione Cenci BolognettiDipartimento di Biologia e Biotecnologie “C. Darwin” Sapienza Università di RomaAbstract In eukaryotes, pyridoxal kinase (PDXK) acts in vitamin B6 salvage pathway to produce pyridoxal 5′-phosphate (PLP), the active form of the vitamin, which is implicated in numerous crucial metabolic reactions. In Drosophila, mutations in the dPdxk gene cause chromosome aberrations (CABs) and increase glucose content in larval hemolymph. Both phenotypes are rescued by the expression of the wild type human PDXK counterpart. Here we expressed, in dPdxk 1 mutant flies, four PDXK human variants: three (D87H, V128I and H246Q) listed in databases, and one (A243G) found in a genetic screening in patients with diabetes. Differently from human wild type PDXK, none of the variants was able to completely rescue CABs and glucose content elicited by dPdxk 1 mutation. Biochemical analysis of D87H, V128I, H246Q and A243G proteins revealed reduced catalytic activity and/or reduced affinity for PLP precursors which justify this behavior. Although these variants are rare in population and carried in heterozygous condition, our findings suggest that in certain metabolic contexts and diseases in which PLP levels are reduced, the presence of these PDXK variants could threaten genome integrity and increase cancer risk.https://doi.org/10.1038/s41598-019-50673-4
collection DOAJ
language English
format Article
sources DOAJ
author Elisa Mascolo
Anna Barile
Lorenzo Stufera Mecarelli
Noemi Amoroso
Chiara Merigliano
Arianna Massimi
Isabella Saggio
Torben Hansen
Angela Tramonti
Martino Luigi Di Salvo
Fabrizio Barbetti
Roberto Contestabile
Fiammetta Vernì
spellingShingle Elisa Mascolo
Anna Barile
Lorenzo Stufera Mecarelli
Noemi Amoroso
Chiara Merigliano
Arianna Massimi
Isabella Saggio
Torben Hansen
Angela Tramonti
Martino Luigi Di Salvo
Fabrizio Barbetti
Roberto Contestabile
Fiammetta Vernì
The expression of four pyridoxal kinase (PDXK) human variants in Drosophila impacts on genome integrity
Scientific Reports
author_facet Elisa Mascolo
Anna Barile
Lorenzo Stufera Mecarelli
Noemi Amoroso
Chiara Merigliano
Arianna Massimi
Isabella Saggio
Torben Hansen
Angela Tramonti
Martino Luigi Di Salvo
Fabrizio Barbetti
Roberto Contestabile
Fiammetta Vernì
author_sort Elisa Mascolo
title The expression of four pyridoxal kinase (PDXK) human variants in Drosophila impacts on genome integrity
title_short The expression of four pyridoxal kinase (PDXK) human variants in Drosophila impacts on genome integrity
title_full The expression of four pyridoxal kinase (PDXK) human variants in Drosophila impacts on genome integrity
title_fullStr The expression of four pyridoxal kinase (PDXK) human variants in Drosophila impacts on genome integrity
title_full_unstemmed The expression of four pyridoxal kinase (PDXK) human variants in Drosophila impacts on genome integrity
title_sort expression of four pyridoxal kinase (pdxk) human variants in drosophila impacts on genome integrity
publisher Nature Publishing Group
series Scientific Reports
issn 2045-2322
publishDate 2019-10-01
description Abstract In eukaryotes, pyridoxal kinase (PDXK) acts in vitamin B6 salvage pathway to produce pyridoxal 5′-phosphate (PLP), the active form of the vitamin, which is implicated in numerous crucial metabolic reactions. In Drosophila, mutations in the dPdxk gene cause chromosome aberrations (CABs) and increase glucose content in larval hemolymph. Both phenotypes are rescued by the expression of the wild type human PDXK counterpart. Here we expressed, in dPdxk 1 mutant flies, four PDXK human variants: three (D87H, V128I and H246Q) listed in databases, and one (A243G) found in a genetic screening in patients with diabetes. Differently from human wild type PDXK, none of the variants was able to completely rescue CABs and glucose content elicited by dPdxk 1 mutation. Biochemical analysis of D87H, V128I, H246Q and A243G proteins revealed reduced catalytic activity and/or reduced affinity for PLP precursors which justify this behavior. Although these variants are rare in population and carried in heterozygous condition, our findings suggest that in certain metabolic contexts and diseases in which PLP levels are reduced, the presence of these PDXK variants could threaten genome integrity and increase cancer risk.
url https://doi.org/10.1038/s41598-019-50673-4
work_keys_str_mv AT elisamascolo theexpressionoffourpyridoxalkinasepdxkhumanvariantsindrosophilaimpactsongenomeintegrity
AT annabarile theexpressionoffourpyridoxalkinasepdxkhumanvariantsindrosophilaimpactsongenomeintegrity
AT lorenzostuferamecarelli theexpressionoffourpyridoxalkinasepdxkhumanvariantsindrosophilaimpactsongenomeintegrity
AT noemiamoroso theexpressionoffourpyridoxalkinasepdxkhumanvariantsindrosophilaimpactsongenomeintegrity
AT chiaramerigliano theexpressionoffourpyridoxalkinasepdxkhumanvariantsindrosophilaimpactsongenomeintegrity
AT ariannamassimi theexpressionoffourpyridoxalkinasepdxkhumanvariantsindrosophilaimpactsongenomeintegrity
AT isabellasaggio theexpressionoffourpyridoxalkinasepdxkhumanvariantsindrosophilaimpactsongenomeintegrity
AT torbenhansen theexpressionoffourpyridoxalkinasepdxkhumanvariantsindrosophilaimpactsongenomeintegrity
AT angelatramonti theexpressionoffourpyridoxalkinasepdxkhumanvariantsindrosophilaimpactsongenomeintegrity
AT martinoluigidisalvo theexpressionoffourpyridoxalkinasepdxkhumanvariantsindrosophilaimpactsongenomeintegrity
AT fabriziobarbetti theexpressionoffourpyridoxalkinasepdxkhumanvariantsindrosophilaimpactsongenomeintegrity
AT robertocontestabile theexpressionoffourpyridoxalkinasepdxkhumanvariantsindrosophilaimpactsongenomeintegrity
AT fiammettaverni theexpressionoffourpyridoxalkinasepdxkhumanvariantsindrosophilaimpactsongenomeintegrity
AT elisamascolo expressionoffourpyridoxalkinasepdxkhumanvariantsindrosophilaimpactsongenomeintegrity
AT annabarile expressionoffourpyridoxalkinasepdxkhumanvariantsindrosophilaimpactsongenomeintegrity
AT lorenzostuferamecarelli expressionoffourpyridoxalkinasepdxkhumanvariantsindrosophilaimpactsongenomeintegrity
AT noemiamoroso expressionoffourpyridoxalkinasepdxkhumanvariantsindrosophilaimpactsongenomeintegrity
AT chiaramerigliano expressionoffourpyridoxalkinasepdxkhumanvariantsindrosophilaimpactsongenomeintegrity
AT ariannamassimi expressionoffourpyridoxalkinasepdxkhumanvariantsindrosophilaimpactsongenomeintegrity
AT isabellasaggio expressionoffourpyridoxalkinasepdxkhumanvariantsindrosophilaimpactsongenomeintegrity
AT torbenhansen expressionoffourpyridoxalkinasepdxkhumanvariantsindrosophilaimpactsongenomeintegrity
AT angelatramonti expressionoffourpyridoxalkinasepdxkhumanvariantsindrosophilaimpactsongenomeintegrity
AT martinoluigidisalvo expressionoffourpyridoxalkinasepdxkhumanvariantsindrosophilaimpactsongenomeintegrity
AT fabriziobarbetti expressionoffourpyridoxalkinasepdxkhumanvariantsindrosophilaimpactsongenomeintegrity
AT robertocontestabile expressionoffourpyridoxalkinasepdxkhumanvariantsindrosophilaimpactsongenomeintegrity
AT fiammettaverni expressionoffourpyridoxalkinasepdxkhumanvariantsindrosophilaimpactsongenomeintegrity
_version_ 1724391311064170496