Comparative Analysis of Whole-Genome Sequence of African Swine Fever Virus Belgium 2018/1

Comparative Analysis of Whole-Genome Sequence of African Swine Fever Virus Belgium 2018/1

We analyzed the whole-genome sequence of African swine fever virus Belgium 2018/1. The strain fits into the European genotype II (>99.98% identity). The high-coverage sequence revealed 15 differences compared with an improved African swine fever virus Georgia 2007/1 sequence. However, in the abse...

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Main Authors: Jan H. Forth, Marylène Tignon, Ann Brigitte Cay, Leonie F. Forth, Dirk Höper, Sandra Blome, Martin Beer
Format: Article
Language:English
Published: Centers for Disease Control and Prevention 2019-06-01
Series:Emerging Infectious Diseases
Subjects:
African swine fever virus
full-genome sequencing
molecular epidemiology
viruses
whole-genome sequencing
Online Access:https://wwwnc.cdc.gov/eid/article/25/6/19-0286_article
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spelling doaj-9be981e6ef394d408c3c34d27dde1e1d2020-11-25T00:20:49ZengCenters for Disease Control and PreventionEmerging Infectious Diseases1080-60401080-60592019-06-012561249125210.3201/eid2506.190286Comparative Analysis of Whole-Genome Sequence of African Swine Fever Virus Belgium 2018/1Jan H. ForthMarylène TignonAnn Brigitte CayLeonie F. ForthDirk HöperSandra BlomeMartin BeerWe analyzed the whole-genome sequence of African swine fever virus Belgium 2018/1. The strain fits into the European genotype II (>99.98% identity). The high-coverage sequence revealed 15 differences compared with an improved African swine fever virus Georgia 2007/1 sequence. However, in the absence of genetic markers, no spatial or temporal correlations could be defined.https://wwwnc.cdc.gov/eid/article/25/6/19-0286_articleAfrican swine fever virusfull-genome sequencingmolecular epidemiologyviruseswhole-genome sequencing
collection DOAJ
language English
format Article
sources DOAJ
author Jan H. Forth
Marylène Tignon
Ann Brigitte Cay
Leonie F. Forth
Dirk Höper
Sandra Blome
Martin Beer
spellingShingle Jan H. Forth
Marylène Tignon
Ann Brigitte Cay
Leonie F. Forth
Dirk Höper
Sandra Blome
Martin Beer
Comparative Analysis of Whole-Genome Sequence of African Swine Fever Virus Belgium 2018/1
Emerging Infectious Diseases
African swine fever virus
full-genome sequencing
molecular epidemiology
viruses
whole-genome sequencing
author_facet Jan H. Forth
Marylène Tignon
Ann Brigitte Cay
Leonie F. Forth
Dirk Höper
Sandra Blome
Martin Beer
author_sort Jan H. Forth
title Comparative Analysis of Whole-Genome Sequence of African Swine Fever Virus Belgium 2018/1
title_short Comparative Analysis of Whole-Genome Sequence of African Swine Fever Virus Belgium 2018/1
title_full Comparative Analysis of Whole-Genome Sequence of African Swine Fever Virus Belgium 2018/1
title_fullStr Comparative Analysis of Whole-Genome Sequence of African Swine Fever Virus Belgium 2018/1
title_full_unstemmed Comparative Analysis of Whole-Genome Sequence of African Swine Fever Virus Belgium 2018/1
title_sort comparative analysis of whole-genome sequence of african swine fever virus belgium 2018/1
publisher Centers for Disease Control and Prevention
series Emerging Infectious Diseases
issn 1080-6040
1080-6059
publishDate 2019-06-01
description We analyzed the whole-genome sequence of African swine fever virus Belgium 2018/1. The strain fits into the European genotype II (>99.98% identity). The high-coverage sequence revealed 15 differences compared with an improved African swine fever virus Georgia 2007/1 sequence. However, in the absence of genetic markers, no spatial or temporal correlations could be defined.
topic African swine fever virus
full-genome sequencing
molecular epidemiology
viruses
whole-genome sequencing
url https://wwwnc.cdc.gov/eid/article/25/6/19-0286_article
work_keys_str_mv AT janhforth comparativeanalysisofwholegenomesequenceofafricanswinefevervirusbelgium20181
AT marylenetignon comparativeanalysisofwholegenomesequenceofafricanswinefevervirusbelgium20181
AT annbrigittecay comparativeanalysisofwholegenomesequenceofafricanswinefevervirusbelgium20181
AT leoniefforth comparativeanalysisofwholegenomesequenceofafricanswinefevervirusbelgium20181
AT dirkhoper comparativeanalysisofwholegenomesequenceofafricanswinefevervirusbelgium20181
AT sandrablome comparativeanalysisofwholegenomesequenceofafricanswinefevervirusbelgium20181
AT martinbeer comparativeanalysisofwholegenomesequenceofafricanswinefevervirusbelgium20181
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