Comparative Analysis of Whole-Genome Sequence of African Swine Fever Virus Belgium 2018/1
We analyzed the whole-genome sequence of African swine fever virus Belgium 2018/1. The strain fits into the European genotype II (>99.98% identity). The high-coverage sequence revealed 15 differences compared with an improved African swine fever virus Georgia 2007/1 sequence. However, in the abse...
Main Authors: | , , , , , , |
---|---|
Format: | Article |
Language: | English |
Published: |
Centers for Disease Control and Prevention
2019-06-01
|
Series: | Emerging Infectious Diseases |
Subjects: | |
Online Access: | https://wwwnc.cdc.gov/eid/article/25/6/19-0286_article |
id |
doaj-9be981e6ef394d408c3c34d27dde1e1d |
---|---|
record_format |
Article |
spelling |
doaj-9be981e6ef394d408c3c34d27dde1e1d2020-11-25T00:20:49ZengCenters for Disease Control and PreventionEmerging Infectious Diseases1080-60401080-60592019-06-012561249125210.3201/eid2506.190286Comparative Analysis of Whole-Genome Sequence of African Swine Fever Virus Belgium 2018/1Jan H. ForthMarylène TignonAnn Brigitte CayLeonie F. ForthDirk HöperSandra BlomeMartin BeerWe analyzed the whole-genome sequence of African swine fever virus Belgium 2018/1. The strain fits into the European genotype II (>99.98% identity). The high-coverage sequence revealed 15 differences compared with an improved African swine fever virus Georgia 2007/1 sequence. However, in the absence of genetic markers, no spatial or temporal correlations could be defined.https://wwwnc.cdc.gov/eid/article/25/6/19-0286_articleAfrican swine fever virusfull-genome sequencingmolecular epidemiologyviruseswhole-genome sequencing |
collection |
DOAJ |
language |
English |
format |
Article |
sources |
DOAJ |
author |
Jan H. Forth Marylène Tignon Ann Brigitte Cay Leonie F. Forth Dirk Höper Sandra Blome Martin Beer |
spellingShingle |
Jan H. Forth Marylène Tignon Ann Brigitte Cay Leonie F. Forth Dirk Höper Sandra Blome Martin Beer Comparative Analysis of Whole-Genome Sequence of African Swine Fever Virus Belgium 2018/1 Emerging Infectious Diseases African swine fever virus full-genome sequencing molecular epidemiology viruses whole-genome sequencing |
author_facet |
Jan H. Forth Marylène Tignon Ann Brigitte Cay Leonie F. Forth Dirk Höper Sandra Blome Martin Beer |
author_sort |
Jan H. Forth |
title |
Comparative Analysis of Whole-Genome Sequence of African Swine Fever Virus Belgium 2018/1 |
title_short |
Comparative Analysis of Whole-Genome Sequence of African Swine Fever Virus Belgium 2018/1 |
title_full |
Comparative Analysis of Whole-Genome Sequence of African Swine Fever Virus Belgium 2018/1 |
title_fullStr |
Comparative Analysis of Whole-Genome Sequence of African Swine Fever Virus Belgium 2018/1 |
title_full_unstemmed |
Comparative Analysis of Whole-Genome Sequence of African Swine Fever Virus Belgium 2018/1 |
title_sort |
comparative analysis of whole-genome sequence of african swine fever virus belgium 2018/1 |
publisher |
Centers for Disease Control and Prevention |
series |
Emerging Infectious Diseases |
issn |
1080-6040 1080-6059 |
publishDate |
2019-06-01 |
description |
We analyzed the whole-genome sequence of African swine fever virus Belgium 2018/1. The strain fits into the European genotype II (>99.98% identity). The high-coverage sequence revealed 15 differences compared with an improved African swine fever virus Georgia 2007/1 sequence. However, in the absence of genetic markers, no spatial or temporal correlations could be defined. |
topic |
African swine fever virus full-genome sequencing molecular epidemiology viruses whole-genome sequencing |
url |
https://wwwnc.cdc.gov/eid/article/25/6/19-0286_article |
work_keys_str_mv |
AT janhforth comparativeanalysisofwholegenomesequenceofafricanswinefevervirusbelgium20181 AT marylenetignon comparativeanalysisofwholegenomesequenceofafricanswinefevervirusbelgium20181 AT annbrigittecay comparativeanalysisofwholegenomesequenceofafricanswinefevervirusbelgium20181 AT leoniefforth comparativeanalysisofwholegenomesequenceofafricanswinefevervirusbelgium20181 AT dirkhoper comparativeanalysisofwholegenomesequenceofafricanswinefevervirusbelgium20181 AT sandrablome comparativeanalysisofwholegenomesequenceofafricanswinefevervirusbelgium20181 AT martinbeer comparativeanalysisofwholegenomesequenceofafricanswinefevervirusbelgium20181 |
_version_ |
1725365714511986688 |