Kobuviruses carried by Rattus norvegicus in Guangdong, China

• Main Authors: Fang-Fei You, Min-Yi Zhang, Huan He, Wen-Qiao He, Yong-Zhi Li, Qing Chen
• Format: Article
• Language: English
• Published: BMC 2020-04-01
• Series: BMC Microbiology
• Subjects: Kobuvirus; Rattus norvegicus; Prevalence; Genetic characteristic
• Online Access: http://link.springer.com/article/10.1186/s12866-020-01767-x

Abstract Background Murine kobuviruses (MuKV) are newly recognized picornaviruses first detected in murine rodents in the USA in 2011. Little information on MuKV epidemiology in murine rodents is available. Therefore, we conducted a survey of the prevalence and genomic characteristics of rat kobuvirus in Guangdong, China. Results Fecal samples from 223 rats (Rattus norvegicus) were collected from Guangdong and kobuviruses were detected in 12.6% (28) of samples. Phylogenetic analysis based on partial 3D and complete VP1 sequence regions showed that rat kobuvirus obtained in this study were genetically closely related to those of rat/mouse kobuvirus reported in other geographical areas. Two near full-length rat kobuvirus genomes (MM33, GZ85) were acquired and phylogenetic analysis of these revealed that they shared very high nucleotide/amino acids identity with one another (95.4%/99.4%) and a sewage-derived sequence (86.9%/93.5% and 87.5%/93.7%, respectively). Comparison with original Aichivirus A strains, such human kobuvirus, revealed amino acid identity values of approximately 80%. Conclusion Our findings indicate that rat kobuvirus have distinctive genetic characteristics from other Aichivirus A viruses. Additionally, rat kobuvirus may spread via sewage.