A diagnostic interface for the ICOsahedral Non-hydrostatic (ICON) modelling framework based on the Modular Earth Submodel System (MESSy v2.50)

Numerical climate and weather models have advanced to finer scales, accompanied by large amounts of output data. The model systems hit the input and output (I/O) bottleneck of modern high-performance computing (HPC) systems. We aim to apply diagnostic methods online during the model simulation inste...

Full description

Bibliographic Details
Main Authors: B. Kern, P. Jöckel
Format: Article
Language:English
Published: Copernicus Publications 2016-10-01
Series:Geoscientific Model Development
Online Access:http://www.geosci-model-dev.net/9/3639/2016/gmd-9-3639-2016.pdf
id doaj-9fe8d1e6e1c34723b870b5fa0f6dcd2a
record_format Article
spelling doaj-9fe8d1e6e1c34723b870b5fa0f6dcd2a2020-11-24T21:35:59ZengCopernicus PublicationsGeoscientific Model Development1991-959X1991-96032016-10-019103639365410.5194/gmd-9-3639-2016A diagnostic interface for the ICOsahedral Non-hydrostatic (ICON) modelling framework based on the Modular Earth Submodel System (MESSy v2.50)B. Kern0P. Jöckel1Deutsches Zentrum für Luft- und Raumfahrt e.V. (DLR), Institut für Physik der Atmosphäre, Oberpfaffenhofen, GermanyDeutsches Zentrum für Luft- und Raumfahrt e.V. (DLR), Institut für Physik der Atmosphäre, Oberpfaffenhofen, GermanyNumerical climate and weather models have advanced to finer scales, accompanied by large amounts of output data. The model systems hit the input and output (I/O) bottleneck of modern high-performance computing (HPC) systems. We aim to apply diagnostic methods online during the model simulation instead of applying them as a post-processing step to written output data, to reduce the amount of I/O. To include diagnostic tools into the model system, we implemented a standardised, easy-to-use interface based on the Modular Earth Submodel System (MESSy) into the ICOsahedral Non-hydrostatic (ICON) modelling framework. The integration of the diagnostic interface into the model system is briefly described. <br><br> Furthermore, we present a prototype implementation of an advanced online diagnostic tool for the aggregation of model data onto a user-defined regular coarse grid. This diagnostic tool will be used to reduce the amount of model output in future simulations. <br><br> Performance tests of the interface and of two different diagnostic tools show, that the interface itself introduces no overhead in form of additional runtime to the model system. The diagnostic tools, however, have significant impact on the model system's runtime. This overhead strongly depends on the characteristics and implementation of the diagnostic tool. A diagnostic tool with high inter-process communication introduces large overhead, whereas the additional runtime of a diagnostic tool without inter-process communication is low. We briefly describe our efforts to reduce the additional runtime from the diagnostic tools, and present a brief analysis of memory consumption. Future work will focus on optimisation of the memory footprint and the I/O operations of the diagnostic interface.http://www.geosci-model-dev.net/9/3639/2016/gmd-9-3639-2016.pdf
collection DOAJ
language English
format Article
sources DOAJ
author B. Kern
P. Jöckel
spellingShingle B. Kern
P. Jöckel
A diagnostic interface for the ICOsahedral Non-hydrostatic (ICON) modelling framework based on the Modular Earth Submodel System (MESSy v2.50)
Geoscientific Model Development
author_facet B. Kern
P. Jöckel
author_sort B. Kern
title A diagnostic interface for the ICOsahedral Non-hydrostatic (ICON) modelling framework based on the Modular Earth Submodel System (MESSy v2.50)
title_short A diagnostic interface for the ICOsahedral Non-hydrostatic (ICON) modelling framework based on the Modular Earth Submodel System (MESSy v2.50)
title_full A diagnostic interface for the ICOsahedral Non-hydrostatic (ICON) modelling framework based on the Modular Earth Submodel System (MESSy v2.50)
title_fullStr A diagnostic interface for the ICOsahedral Non-hydrostatic (ICON) modelling framework based on the Modular Earth Submodel System (MESSy v2.50)
title_full_unstemmed A diagnostic interface for the ICOsahedral Non-hydrostatic (ICON) modelling framework based on the Modular Earth Submodel System (MESSy v2.50)
title_sort diagnostic interface for the icosahedral non-hydrostatic (icon) modelling framework based on the modular earth submodel system (messy v2.50)
publisher Copernicus Publications
series Geoscientific Model Development
issn 1991-959X
1991-9603
publishDate 2016-10-01
description Numerical climate and weather models have advanced to finer scales, accompanied by large amounts of output data. The model systems hit the input and output (I/O) bottleneck of modern high-performance computing (HPC) systems. We aim to apply diagnostic methods online during the model simulation instead of applying them as a post-processing step to written output data, to reduce the amount of I/O. To include diagnostic tools into the model system, we implemented a standardised, easy-to-use interface based on the Modular Earth Submodel System (MESSy) into the ICOsahedral Non-hydrostatic (ICON) modelling framework. The integration of the diagnostic interface into the model system is briefly described. <br><br> Furthermore, we present a prototype implementation of an advanced online diagnostic tool for the aggregation of model data onto a user-defined regular coarse grid. This diagnostic tool will be used to reduce the amount of model output in future simulations. <br><br> Performance tests of the interface and of two different diagnostic tools show, that the interface itself introduces no overhead in form of additional runtime to the model system. The diagnostic tools, however, have significant impact on the model system's runtime. This overhead strongly depends on the characteristics and implementation of the diagnostic tool. A diagnostic tool with high inter-process communication introduces large overhead, whereas the additional runtime of a diagnostic tool without inter-process communication is low. We briefly describe our efforts to reduce the additional runtime from the diagnostic tools, and present a brief analysis of memory consumption. Future work will focus on optimisation of the memory footprint and the I/O operations of the diagnostic interface.
url http://www.geosci-model-dev.net/9/3639/2016/gmd-9-3639-2016.pdf
work_keys_str_mv AT bkern adiagnosticinterfacefortheicosahedralnonhydrostaticiconmodellingframeworkbasedonthemodularearthsubmodelsystemmessyv250
AT pjockel adiagnosticinterfacefortheicosahedralnonhydrostaticiconmodellingframeworkbasedonthemodularearthsubmodelsystemmessyv250
AT bkern diagnosticinterfacefortheicosahedralnonhydrostaticiconmodellingframeworkbasedonthemodularearthsubmodelsystemmessyv250
AT pjockel diagnosticinterfacefortheicosahedralnonhydrostaticiconmodellingframeworkbasedonthemodularearthsubmodelsystemmessyv250
_version_ 1725942989334773760