Getting insight into the pan-genome structure with PangTree
Abstract Background The term pan-genome was proposed to denominate collections of genomic sequences jointly analyzed or used as a reference. The constant growth of genomic data intensifies development of data structures and algorithms to investigate pan-genomes efficiently. Results This work focuses...
Main Authors: | Paulina Dziadkiewicz, Norbert Dojer |
---|---|
Format: | Article |
Language: | English |
Published: |
BMC
2020-04-01
|
Series: | BMC Genomics |
Subjects: | |
Online Access: | http://link.springer.com/article/10.1186/s12864-020-6610-4 |
Similar Items
-
seq-seq-pan: building a computational pan-genome data structure on whole genome alignment
by: Christine Jandrasits, et al.
Published: (2018-01-01) -
Towards pan-genome read alignment to improve variation calling
by: Daniel Valenzuela, et al.
Published: (2018-05-01) -
ReprDB and panDB: minimalist databases with maximal microbial representation
by: Wei Zhou, et al.
Published: (2018-01-01) -
Genome and pan-genome analysis to classify emerging bacteria
by: Aurélia Caputo, et al.
Published: (2019-02-01) -
Integrating pan-genome with metagenome for microbial community profiling
by: Chaofang Zhong, et al.
Published: (2021-01-01)