Small RNA sequencing for secondary metabolite analysis in Persicaria minor
Persicaria minor (kesum) is an important medicinal plant and commonly found in southeast countries; Malaysia, Thailand, Indonesia, and Vietnam. This plant is enriched with a variety of secondary metabolites (SMs), and among these SMs, terpenoids are in high abundance. Terpenoids are comprised of man...
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doaj-a6b399810b9f43e38e7cd54681ad02d02020-11-25T02:56:50ZengElsevierGenomics Data2213-59602017-09-0113C3410.1016/j.gdata.2017.05.014Small RNA sequencing for secondary metabolite analysis in Persicaria minorAbdul Fatah A. Samad0Nazaruddin Nazaruddin1Muhammad Sajad2Jaeyres Jani3Abdul Munir Abdul Murad4Zamri Zainal5Ismanizan Ismail6School of Biosciences and Biotechnology, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, 43600 UKM Bangi, Selangor, MalaysiaSchool of Biosciences and Biotechnology, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, 43600 UKM Bangi, Selangor, MalaysiaInstitute of Systems Biology, Universiti Kebangsaan Malaysia, 43600 UKM Bangi, Selangor, MalaysiaBioEasy Sdn. Bhd. and ScienceVision Sdn. Bhd., Setia Alam, Seksyen U13, 40170 Shah Alam, Selangor, MalaysiaSchool of Biosciences and Biotechnology, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, 43600 UKM Bangi, Selangor, MalaysiaSchool of Biosciences and Biotechnology, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, 43600 UKM Bangi, Selangor, MalaysiaSchool of Biosciences and Biotechnology, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, 43600 UKM Bangi, Selangor, MalaysiaPersicaria minor (kesum) is an important medicinal plant and commonly found in southeast countries; Malaysia, Thailand, Indonesia, and Vietnam. This plant is enriched with a variety of secondary metabolites (SMs), and among these SMs, terpenoids are in high abundance. Terpenoids are comprised of many valuable biomolecules which have well-established role in agriculture and pharmaceutical industry. In P. minor, for the first time, we have generated small RNAs data sets, which can be used as tool in deciphering their roles in terpenoid biosynthesis pathways. Fungal pathogen, Fusarium oxysporum was used as elicitor to trigger SMs biosynthesis in P. minor. Raw reads and small RNA analysis data have already been deposited at GenBank under the accessions; SRX2645684 (Fusarium-treated), SRX2645685 (Fusarium-treated), SRX2645686 (mock-infected), and SRX2645687 (mock-infected).http://www.sciencedirect.com/science/article/pii/S221359601730079XSmall RNA sequencingPersicaria minorFusarium oxysporumSecondary metabolite |
collection |
DOAJ |
language |
English |
format |
Article |
sources |
DOAJ |
author |
Abdul Fatah A. Samad Nazaruddin Nazaruddin Muhammad Sajad Jaeyres Jani Abdul Munir Abdul Murad Zamri Zainal Ismanizan Ismail |
spellingShingle |
Abdul Fatah A. Samad Nazaruddin Nazaruddin Muhammad Sajad Jaeyres Jani Abdul Munir Abdul Murad Zamri Zainal Ismanizan Ismail Small RNA sequencing for secondary metabolite analysis in Persicaria minor Genomics Data Small RNA sequencing Persicaria minor Fusarium oxysporum Secondary metabolite |
author_facet |
Abdul Fatah A. Samad Nazaruddin Nazaruddin Muhammad Sajad Jaeyres Jani Abdul Munir Abdul Murad Zamri Zainal Ismanizan Ismail |
author_sort |
Abdul Fatah A. Samad |
title |
Small RNA sequencing for secondary metabolite analysis in Persicaria minor |
title_short |
Small RNA sequencing for secondary metabolite analysis in Persicaria minor |
title_full |
Small RNA sequencing for secondary metabolite analysis in Persicaria minor |
title_fullStr |
Small RNA sequencing for secondary metabolite analysis in Persicaria minor |
title_full_unstemmed |
Small RNA sequencing for secondary metabolite analysis in Persicaria minor |
title_sort |
small rna sequencing for secondary metabolite analysis in persicaria minor |
publisher |
Elsevier |
series |
Genomics Data |
issn |
2213-5960 |
publishDate |
2017-09-01 |
description |
Persicaria minor (kesum) is an important medicinal plant and commonly found in southeast countries; Malaysia, Thailand, Indonesia, and Vietnam. This plant is enriched with a variety of secondary metabolites (SMs), and among these SMs, terpenoids are in high abundance. Terpenoids are comprised of many valuable biomolecules which have well-established role in agriculture and pharmaceutical industry. In P. minor, for the first time, we have generated small RNAs data sets, which can be used as tool in deciphering their roles in terpenoid biosynthesis pathways. Fungal pathogen, Fusarium oxysporum was used as elicitor to trigger SMs biosynthesis in P. minor. Raw reads and small RNA analysis data have already been deposited at GenBank under the accessions; SRX2645684 (Fusarium-treated), SRX2645685 (Fusarium-treated), SRX2645686 (mock-infected), and SRX2645687 (mock-infected). |
topic |
Small RNA sequencing Persicaria minor Fusarium oxysporum Secondary metabolite |
url |
http://www.sciencedirect.com/science/article/pii/S221359601730079X |
work_keys_str_mv |
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