Retrieving functional pathways of biomolecules from single-particle snapshots

There is a great interest in retrieving functional pathways from cryo-EM single-particle data. Here, the authors present an approach that combines cryo-EM with advanced data-analytical methods and molecular dynamics simulations to reveal the functional pathways traversed on experimentally derived en...

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Main Authors:	Ali Dashti, Ghoncheh Mashayekhi, Mrinal Shekhar, Danya Ben Hail, Salah Salah, Peter Schwander, Amedee des Georges, Abhishek Singharoy, Joachim Frank, Abbas Ourmazd
Format:	Article
Language:	English
Published:	Nature Publishing Group 2020-09-01
Series:	Nature Communications
Online Access:	https://doi.org/10.1038/s41467-020-18403-x

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spelling	doaj-a9730a6e4420466a99ccf8fd2dbeaec22021-09-19T11:51:41ZengNature Publishing GroupNature Communications2041-17232020-09-0111111410.1038/s41467-020-18403-xRetrieving functional pathways of biomolecules from single-particle snapshotsAli Dashti0Ghoncheh Mashayekhi1Mrinal Shekhar2Danya Ben Hail3Salah Salah4Peter Schwander5Amedee des Georges6Abhishek Singharoy7Joachim Frank8Abbas Ourmazd9Department of Physics, University of Wisconsin MilwaukeeDepartment of Physics, University of Wisconsin MilwaukeeBeckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign 405 N. Mathews Ave.Structural Biology Initiative, CUNY Advanced Science Research Center, City University of New YorkStructural Biology Initiative, CUNY Advanced Science Research Center, City University of New YorkDepartment of Physics, University of Wisconsin MilwaukeeStructural Biology Initiative, CUNY Advanced Science Research Center, City University of New YorkSchool of Molecular Sciences, Center for Applied Structural Discovery, Arizona State UniversityDepartment of Biochemistry and Molecular Biophysics, Columbia UniversityDepartment of Physics, University of Wisconsin MilwaukeeThere is a great interest in retrieving functional pathways from cryo-EM single-particle data. Here, the authors present an approach that combines cryo-EM with advanced data-analytical methods and molecular dynamics simulations to reveal the functional pathways traversed on experimentally derived energy landscapes using the ryanodine receptor type 1 as an example.https://doi.org/10.1038/s41467-020-18403-x
collection	DOAJ
language	English
format	Article
sources	DOAJ
author	Ali Dashti Ghoncheh Mashayekhi Mrinal Shekhar Danya Ben Hail Salah Salah Peter Schwander Amedee des Georges Abhishek Singharoy Joachim Frank Abbas Ourmazd
spellingShingle	Ali Dashti Ghoncheh Mashayekhi Mrinal Shekhar Danya Ben Hail Salah Salah Peter Schwander Amedee des Georges Abhishek Singharoy Joachim Frank Abbas Ourmazd Retrieving functional pathways of biomolecules from single-particle snapshots Nature Communications
author_facet	Ali Dashti Ghoncheh Mashayekhi Mrinal Shekhar Danya Ben Hail Salah Salah Peter Schwander Amedee des Georges Abhishek Singharoy Joachim Frank Abbas Ourmazd
author_sort	Ali Dashti
title	Retrieving functional pathways of biomolecules from single-particle snapshots
title_short	Retrieving functional pathways of biomolecules from single-particle snapshots
title_full	Retrieving functional pathways of biomolecules from single-particle snapshots
title_fullStr	Retrieving functional pathways of biomolecules from single-particle snapshots
title_full_unstemmed	Retrieving functional pathways of biomolecules from single-particle snapshots
title_sort	retrieving functional pathways of biomolecules from single-particle snapshots
publisher	Nature Publishing Group
series	Nature Communications
issn	2041-1723
publishDate	2020-09-01
description	There is a great interest in retrieving functional pathways from cryo-EM single-particle data. Here, the authors present an approach that combines cryo-EM with advanced data-analytical methods and molecular dynamics simulations to reveal the functional pathways traversed on experimentally derived energy landscapes using the ryanodine receptor type 1 as an example.
url	https://doi.org/10.1038/s41467-020-18403-x
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Retrieving functional pathways of biomolecules from single-particle snapshots

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