Molecular diagnosis of hereditary spherocytosis by multi-gene target sequencing in Korea: matching with osmotic fragility test and presence of spherocyte

Abstract Background Current diagnostic tests for hereditary spherocytosis (HS) focus on the detection of hemolysis or indirectly assessing defects of membrane protein, whereas direct methods to detect protein defects are complicated and difficult to implement. In the present study, we investigated t...

Full description

Bibliographic Details
Main Authors: Hyoung Soo Choi, Qute Choi, Jung-Ah Kim, Kyong Ok Im, Si Nae Park, Yoomi Park, Hee Young Shin, Hyoung Jin Kang, Hoon Kook, Seon Young Kim, Soo-Jeong Kim, Inho Kim, Ji Yoon Kim, Hawk Kim, Kyung Duk Park, Kyung Bae Park, Meerim Park, Sang Kyu Park, Eun Sil Park, Jeong-A Park, Jun Eun Park, Ji Kyoung Park, Hee Jo Baek, Jeong Ho Seo, Ye Jee Shim, Hyo Seop Ahn, Keon Hee Yoo, Hoi Soo Yoon, Young-Woong Won, Kun Soo Lee, Kwang Chul Lee, Mee Jeong Lee, Sun Ah. Lee, Jun Ah Lee, Jae Min Lee, Jae Hee Lee, Ji Won Lee, Young Tak Lim, Hyun Joo Jung, Hee Won Chueh, Eun Jin Choi, Hye Lim Jung, Ju Han Kim, Dong Soon Lee, The Hereditary Hemolytic Anemia Working Party of the Korean Society of Hematology
Format: Article
Language:English
Published: BMC 2019-05-01
Series:Orphanet Journal of Rare Diseases
Subjects:
Online Access:http://link.springer.com/article/10.1186/s13023-019-1070-0
id doaj-abee68d56a8e4cec884160b107e54fd9
record_format Article
collection DOAJ
language English
format Article
sources DOAJ
author Hyoung Soo Choi
Qute Choi
Jung-Ah Kim
Kyong Ok Im
Si Nae Park
Yoomi Park
Hee Young Shin
Hyoung Jin Kang
Hoon Kook
Seon Young Kim
Soo-Jeong Kim
Inho Kim
Ji Yoon Kim
Hawk Kim
Kyung Duk Park
Kyung Bae Park
Meerim Park
Sang Kyu Park
Eun Sil Park
Jeong-A Park
Jun Eun Park
Ji Kyoung Park
Hee Jo Baek
Jeong Ho Seo
Ye Jee Shim
Hyo Seop Ahn
Keon Hee Yoo
Hoi Soo Yoon
Young-Woong Won
Kun Soo Lee
Kwang Chul Lee
Mee Jeong Lee
Sun Ah. Lee
Jun Ah Lee
Jae Min Lee
Jae Hee Lee
Ji Won Lee
Young Tak Lim
Hyun Joo Jung
Hee Won Chueh
Eun Jin Choi
Hye Lim Jung
Ju Han Kim
Dong Soon Lee
The Hereditary Hemolytic Anemia Working Party of the Korean Society of Hematology
spellingShingle Hyoung Soo Choi
Qute Choi
Jung-Ah Kim
Kyong Ok Im
Si Nae Park
Yoomi Park
Hee Young Shin
Hyoung Jin Kang
Hoon Kook
Seon Young Kim
Soo-Jeong Kim
Inho Kim
Ji Yoon Kim
Hawk Kim
Kyung Duk Park
Kyung Bae Park
Meerim Park
Sang Kyu Park
Eun Sil Park
Jeong-A Park
Jun Eun Park
Ji Kyoung Park
Hee Jo Baek
Jeong Ho Seo
Ye Jee Shim
Hyo Seop Ahn
Keon Hee Yoo
Hoi Soo Yoon
Young-Woong Won
Kun Soo Lee
Kwang Chul Lee
Mee Jeong Lee
Sun Ah. Lee
Jun Ah Lee
Jae Min Lee
Jae Hee Lee
Ji Won Lee
Young Tak Lim
Hyun Joo Jung
Hee Won Chueh
Eun Jin Choi
Hye Lim Jung
Ju Han Kim
Dong Soon Lee
The Hereditary Hemolytic Anemia Working Party of the Korean Society of Hematology
Molecular diagnosis of hereditary spherocytosis by multi-gene target sequencing in Korea: matching with osmotic fragility test and presence of spherocyte
Orphanet Journal of Rare Diseases
Hereditary spherocytosis
RBC membrane disorder
Molecular diagnosis
author_facet Hyoung Soo Choi
Qute Choi
Jung-Ah Kim
Kyong Ok Im
Si Nae Park
Yoomi Park
Hee Young Shin
Hyoung Jin Kang
Hoon Kook
Seon Young Kim
Soo-Jeong Kim
Inho Kim
Ji Yoon Kim
Hawk Kim
Kyung Duk Park
Kyung Bae Park
Meerim Park
Sang Kyu Park
Eun Sil Park
Jeong-A Park
Jun Eun Park
Ji Kyoung Park
Hee Jo Baek
Jeong Ho Seo
Ye Jee Shim
Hyo Seop Ahn
Keon Hee Yoo
Hoi Soo Yoon
Young-Woong Won
Kun Soo Lee
Kwang Chul Lee
Mee Jeong Lee
Sun Ah. Lee
Jun Ah Lee
Jae Min Lee
Jae Hee Lee
Ji Won Lee
Young Tak Lim
Hyun Joo Jung
Hee Won Chueh
Eun Jin Choi
Hye Lim Jung
Ju Han Kim
Dong Soon Lee
The Hereditary Hemolytic Anemia Working Party of the Korean Society of Hematology
author_sort Hyoung Soo Choi
title Molecular diagnosis of hereditary spherocytosis by multi-gene target sequencing in Korea: matching with osmotic fragility test and presence of spherocyte
title_short Molecular diagnosis of hereditary spherocytosis by multi-gene target sequencing in Korea: matching with osmotic fragility test and presence of spherocyte
title_full Molecular diagnosis of hereditary spherocytosis by multi-gene target sequencing in Korea: matching with osmotic fragility test and presence of spherocyte
title_fullStr Molecular diagnosis of hereditary spherocytosis by multi-gene target sequencing in Korea: matching with osmotic fragility test and presence of spherocyte
title_full_unstemmed Molecular diagnosis of hereditary spherocytosis by multi-gene target sequencing in Korea: matching with osmotic fragility test and presence of spherocyte
title_sort molecular diagnosis of hereditary spherocytosis by multi-gene target sequencing in korea: matching with osmotic fragility test and presence of spherocyte
publisher BMC
series Orphanet Journal of Rare Diseases
issn 1750-1172
publishDate 2019-05-01
description Abstract Background Current diagnostic tests for hereditary spherocytosis (HS) focus on the detection of hemolysis or indirectly assessing defects of membrane protein, whereas direct methods to detect protein defects are complicated and difficult to implement. In the present study, we investigated the patterns of genetic variation associated with HS among patients clinically diagnosed with HS. Methods Multi-gene targeted sequencing of 43 genes (17 RBC membrane protein-encoding genes, 20 RBC enzyme-encoding genes, and six additional genes for the differential diagnosis) was performed using the Illumina HiSeq platform. Results Among 59 patients with HS, 50 (84.7%) had one or more significant variants in a RBC membrane protein-encoding genes. A total of 54 significant variants including 46 novel mutations were detected in six RBC membrane protein-encoding genes, with the highest number of variants found in SPTB (n = 28), and followed by ANK1 (n = 19), SLC4A1 (n = 3), SPTA1 (n = 2), EPB41 (n = 1), and EPB42 (n = 1). Concurrent mutations of genes encoding RBC enzymes (ALDOB, GAPDH, and GSR) were detected in three patients. UGT1A1 mutations were present in 24 patients (40.7%). Positive rate of osmotic fragility test was 86.8% among patients harboring HS-related gene mutations. Conclusions This constitutes the first large-scaled genetic study of Korean patients with HS. We demonstrated that multi-gene target sequencing is sensitive and feasible that can be used as a powerful tool for diagnosing HS. Considering the discrepancies of clinical and molecular diagnoses of HS, our findings suggest that molecular genetic analysis is required for accurate diagnosis of HS.
topic Hereditary spherocytosis
RBC membrane disorder
Molecular diagnosis
url http://link.springer.com/article/10.1186/s13023-019-1070-0
work_keys_str_mv AT hyoungsoochoi moleculardiagnosisofhereditaryspherocytosisbymultigenetargetsequencinginkoreamatchingwithosmoticfragilitytestandpresenceofspherocyte
AT qutechoi moleculardiagnosisofhereditaryspherocytosisbymultigenetargetsequencinginkoreamatchingwithosmoticfragilitytestandpresenceofspherocyte
AT jungahkim moleculardiagnosisofhereditaryspherocytosisbymultigenetargetsequencinginkoreamatchingwithosmoticfragilitytestandpresenceofspherocyte
AT kyongokim moleculardiagnosisofhereditaryspherocytosisbymultigenetargetsequencinginkoreamatchingwithosmoticfragilitytestandpresenceofspherocyte
AT sinaepark moleculardiagnosisofhereditaryspherocytosisbymultigenetargetsequencinginkoreamatchingwithosmoticfragilitytestandpresenceofspherocyte
AT yoomipark moleculardiagnosisofhereditaryspherocytosisbymultigenetargetsequencinginkoreamatchingwithosmoticfragilitytestandpresenceofspherocyte
AT heeyoungshin moleculardiagnosisofhereditaryspherocytosisbymultigenetargetsequencinginkoreamatchingwithosmoticfragilitytestandpresenceofspherocyte
AT hyoungjinkang moleculardiagnosisofhereditaryspherocytosisbymultigenetargetsequencinginkoreamatchingwithosmoticfragilitytestandpresenceofspherocyte
AT hoonkook moleculardiagnosisofhereditaryspherocytosisbymultigenetargetsequencinginkoreamatchingwithosmoticfragilitytestandpresenceofspherocyte
AT seonyoungkim moleculardiagnosisofhereditaryspherocytosisbymultigenetargetsequencinginkoreamatchingwithosmoticfragilitytestandpresenceofspherocyte
AT soojeongkim moleculardiagnosisofhereditaryspherocytosisbymultigenetargetsequencinginkoreamatchingwithosmoticfragilitytestandpresenceofspherocyte
AT inhokim moleculardiagnosisofhereditaryspherocytosisbymultigenetargetsequencinginkoreamatchingwithosmoticfragilitytestandpresenceofspherocyte
AT jiyoonkim moleculardiagnosisofhereditaryspherocytosisbymultigenetargetsequencinginkoreamatchingwithosmoticfragilitytestandpresenceofspherocyte
AT hawkkim moleculardiagnosisofhereditaryspherocytosisbymultigenetargetsequencinginkoreamatchingwithosmoticfragilitytestandpresenceofspherocyte
AT kyungdukpark moleculardiagnosisofhereditaryspherocytosisbymultigenetargetsequencinginkoreamatchingwithosmoticfragilitytestandpresenceofspherocyte
AT kyungbaepark moleculardiagnosisofhereditaryspherocytosisbymultigenetargetsequencinginkoreamatchingwithosmoticfragilitytestandpresenceofspherocyte
AT meerimpark moleculardiagnosisofhereditaryspherocytosisbymultigenetargetsequencinginkoreamatchingwithosmoticfragilitytestandpresenceofspherocyte
AT sangkyupark moleculardiagnosisofhereditaryspherocytosisbymultigenetargetsequencinginkoreamatchingwithosmoticfragilitytestandpresenceofspherocyte
AT eunsilpark moleculardiagnosisofhereditaryspherocytosisbymultigenetargetsequencinginkoreamatchingwithosmoticfragilitytestandpresenceofspherocyte
AT jeongapark moleculardiagnosisofhereditaryspherocytosisbymultigenetargetsequencinginkoreamatchingwithosmoticfragilitytestandpresenceofspherocyte
AT juneunpark moleculardiagnosisofhereditaryspherocytosisbymultigenetargetsequencinginkoreamatchingwithosmoticfragilitytestandpresenceofspherocyte
AT jikyoungpark moleculardiagnosisofhereditaryspherocytosisbymultigenetargetsequencinginkoreamatchingwithosmoticfragilitytestandpresenceofspherocyte
AT heejobaek moleculardiagnosisofhereditaryspherocytosisbymultigenetargetsequencinginkoreamatchingwithosmoticfragilitytestandpresenceofspherocyte
AT jeonghoseo moleculardiagnosisofhereditaryspherocytosisbymultigenetargetsequencinginkoreamatchingwithosmoticfragilitytestandpresenceofspherocyte
AT yejeeshim moleculardiagnosisofhereditaryspherocytosisbymultigenetargetsequencinginkoreamatchingwithosmoticfragilitytestandpresenceofspherocyte
AT hyoseopahn moleculardiagnosisofhereditaryspherocytosisbymultigenetargetsequencinginkoreamatchingwithosmoticfragilitytestandpresenceofspherocyte
AT keonheeyoo moleculardiagnosisofhereditaryspherocytosisbymultigenetargetsequencinginkoreamatchingwithosmoticfragilitytestandpresenceofspherocyte
AT hoisooyoon moleculardiagnosisofhereditaryspherocytosisbymultigenetargetsequencinginkoreamatchingwithosmoticfragilitytestandpresenceofspherocyte
AT youngwoongwon moleculardiagnosisofhereditaryspherocytosisbymultigenetargetsequencinginkoreamatchingwithosmoticfragilitytestandpresenceofspherocyte
AT kunsoolee moleculardiagnosisofhereditaryspherocytosisbymultigenetargetsequencinginkoreamatchingwithosmoticfragilitytestandpresenceofspherocyte
AT kwangchullee moleculardiagnosisofhereditaryspherocytosisbymultigenetargetsequencinginkoreamatchingwithosmoticfragilitytestandpresenceofspherocyte
AT meejeonglee moleculardiagnosisofhereditaryspherocytosisbymultigenetargetsequencinginkoreamatchingwithosmoticfragilitytestandpresenceofspherocyte
AT sunahlee moleculardiagnosisofhereditaryspherocytosisbymultigenetargetsequencinginkoreamatchingwithosmoticfragilitytestandpresenceofspherocyte
AT junahlee moleculardiagnosisofhereditaryspherocytosisbymultigenetargetsequencinginkoreamatchingwithosmoticfragilitytestandpresenceofspherocyte
AT jaeminlee moleculardiagnosisofhereditaryspherocytosisbymultigenetargetsequencinginkoreamatchingwithosmoticfragilitytestandpresenceofspherocyte
AT jaeheelee moleculardiagnosisofhereditaryspherocytosisbymultigenetargetsequencinginkoreamatchingwithosmoticfragilitytestandpresenceofspherocyte
AT jiwonlee moleculardiagnosisofhereditaryspherocytosisbymultigenetargetsequencinginkoreamatchingwithosmoticfragilitytestandpresenceofspherocyte
AT youngtaklim moleculardiagnosisofhereditaryspherocytosisbymultigenetargetsequencinginkoreamatchingwithosmoticfragilitytestandpresenceofspherocyte
AT hyunjoojung moleculardiagnosisofhereditaryspherocytosisbymultigenetargetsequencinginkoreamatchingwithosmoticfragilitytestandpresenceofspherocyte
AT heewonchueh moleculardiagnosisofhereditaryspherocytosisbymultigenetargetsequencinginkoreamatchingwithosmoticfragilitytestandpresenceofspherocyte
AT eunjinchoi moleculardiagnosisofhereditaryspherocytosisbymultigenetargetsequencinginkoreamatchingwithosmoticfragilitytestandpresenceofspherocyte
AT hyelimjung moleculardiagnosisofhereditaryspherocytosisbymultigenetargetsequencinginkoreamatchingwithosmoticfragilitytestandpresenceofspherocyte
AT juhankim moleculardiagnosisofhereditaryspherocytosisbymultigenetargetsequencinginkoreamatchingwithosmoticfragilitytestandpresenceofspherocyte
AT dongsoonlee moleculardiagnosisofhereditaryspherocytosisbymultigenetargetsequencinginkoreamatchingwithosmoticfragilitytestandpresenceofspherocyte
AT thehereditaryhemolyticanemiaworkingpartyofthekoreansocietyofhematology moleculardiagnosisofhereditaryspherocytosisbymultigenetargetsequencinginkoreamatchingwithosmoticfragilitytestandpresenceofspherocyte
_version_ 1724615300050059264
spelling doaj-abee68d56a8e4cec884160b107e54fd92020-11-25T03:21:21ZengBMCOrphanet Journal of Rare Diseases1750-11722019-05-0114111310.1186/s13023-019-1070-0Molecular diagnosis of hereditary spherocytosis by multi-gene target sequencing in Korea: matching with osmotic fragility test and presence of spherocyteHyoung Soo Choi0Qute Choi1Jung-Ah Kim2Kyong Ok Im3Si Nae Park4Yoomi Park5Hee Young Shin6Hyoung Jin Kang7Hoon Kook8Seon Young Kim9Soo-Jeong Kim10Inho Kim11Ji Yoon Kim12Hawk Kim13Kyung Duk Park14Kyung Bae Park15Meerim Park16Sang Kyu Park17Eun Sil Park18Jeong-A Park19Jun Eun Park20Ji Kyoung Park21Hee Jo Baek22Jeong Ho Seo23Ye Jee Shim24Hyo Seop Ahn25Keon Hee Yoo26Hoi Soo Yoon27Young-Woong Won28Kun Soo Lee29Kwang Chul Lee30Mee Jeong Lee31Sun Ah. Lee32Jun Ah Lee33Jae Min Lee34Jae Hee Lee35Ji Won Lee36Young Tak Lim37Hyun Joo Jung38Hee Won Chueh39Eun Jin Choi40Hye Lim Jung41Ju Han Kim42Dong Soon Lee43The Hereditary Hemolytic Anemia Working Party of the Korean Society of Hematology44Department of Pediatrics, Seoul National University Bundang HospitalDepartment of Laboratory Medicine, Chungnam National University HospitalDepartment of Laboratory Medicine, Seoul National University College of MedicineCancer Research Institute, Seoul National University College of MedicineCancer Research Institute, Seoul National University College of MedicineDivision of Biomedical Informatics, Seoul National University Biomedical Informatics (SNUBI), Seoul National University College of MedicineCancer Research Institute, Seoul National University College of MedicineCancer Research Institute, Seoul National University College of MedicineDepartment of Pediatrics, Chonnam National University Hwasun Hospital, Chonnam National University Medical SchoolDepartment of Laboratory Medicine, Chungnam National University School of MedicineDivision of Hematology, Department of Internal Medicine, Yonsei University College of Medicine, Severance HospitalDepartment of Internal Medicine, Seoul National University College MedicineDepartment of Pediatrics, Kyungpook National University School of MedicineDepartment of Hematology and Oncology, Ulsan University Hospital, University of Ulsan College of MedicineCancer Research Institute, Seoul National University College of MedicineDepartment of Pediatrics, Soonchunhyang University Hospital CheonanDepartment of Pediatrics, Chungbuk National University College of MedicineDepartment of Pediatrics, Ulsan University HospitalDepartment of Pediatrics, Gyeongsang National University College of MedicineDepartment of Pediatrics, Inje University College of MedicineDepartment of Pediatrics, Ajou University School of MedicineDepartment of pediatrics, Inje University College of Medicine, Busan Paik HospitalDepartment of Pediatrics, Chonnam National University Hwasun Hospital, Chonnam National University Medical SchoolDepartment of Pediatrics, Pusan National University College of MedicineDepartment of Pediatrics, Keimyung University School of Medicine and Dongsan Medical CenterDepartment of Pediatrics, Seoul National University College of MedicineDepartment of Pediatrics, Sungkyunkwan University School of Medicine, Samsung Medical CenterDepartment of Pediatrics, Kyung Hee University School of MedicineDepartment of Internal Medicine, Hanyang University Guri HospitalDepartment of Pediatrics, Kyungpook National University School of MedicineDepartment of Pediatrics, Korea University College of MedicineDepartment of Pediatrics, University of Dankook College of MedicineDepartment of Internal Medicine, Daegu Fatima HospitalDepartment of Pediatrics, Korea Cancer Center HospitalDepartment of Pediatrics, College of Medicine, Yeungnam UniversityDepartment of Pediatrics, Chosun University School of MedicineDepartment of Pediatrics, Sungkyunkwan University School of Medicine, Samsung Medical CenterDepartment of Pediatrics, Pusan National University College of MedicineDepartment of Pediatrics, Ajou University School of MedicineDepartment of Pediatrics, Dong-A University College of MedicineDepartment of Pediatrics, Daegu Catholic UniversityDepartment of Pediatrics, Sungkyunkwan University School of MedicineDivision of Biomedical Informatics, Seoul National University Biomedical Informatics (SNUBI), Seoul National University College of MedicineDepartment of Laboratory Medicine, Seoul National University College of MedicineThe Korean Society of HematologyAbstract Background Current diagnostic tests for hereditary spherocytosis (HS) focus on the detection of hemolysis or indirectly assessing defects of membrane protein, whereas direct methods to detect protein defects are complicated and difficult to implement. In the present study, we investigated the patterns of genetic variation associated with HS among patients clinically diagnosed with HS. Methods Multi-gene targeted sequencing of 43 genes (17 RBC membrane protein-encoding genes, 20 RBC enzyme-encoding genes, and six additional genes for the differential diagnosis) was performed using the Illumina HiSeq platform. Results Among 59 patients with HS, 50 (84.7%) had one or more significant variants in a RBC membrane protein-encoding genes. A total of 54 significant variants including 46 novel mutations were detected in six RBC membrane protein-encoding genes, with the highest number of variants found in SPTB (n = 28), and followed by ANK1 (n = 19), SLC4A1 (n = 3), SPTA1 (n = 2), EPB41 (n = 1), and EPB42 (n = 1). Concurrent mutations of genes encoding RBC enzymes (ALDOB, GAPDH, and GSR) were detected in three patients. UGT1A1 mutations were present in 24 patients (40.7%). Positive rate of osmotic fragility test was 86.8% among patients harboring HS-related gene mutations. Conclusions This constitutes the first large-scaled genetic study of Korean patients with HS. We demonstrated that multi-gene target sequencing is sensitive and feasible that can be used as a powerful tool for diagnosing HS. Considering the discrepancies of clinical and molecular diagnoses of HS, our findings suggest that molecular genetic analysis is required for accurate diagnosis of HS.http://link.springer.com/article/10.1186/s13023-019-1070-0Hereditary spherocytosisRBC membrane disorderMolecular diagnosis