Meta-analysis of gene–environment-wide association scans accounting for education level identifies additional loci for refractive error

This report by the Consortium for Refractive Error and Myopia uses gene-environment-wide interaction study (GEWIS) to identify genetic loci that affect environmental influence in myopia development, and identifies ethnic specific genetic loci that attribute to eye refractive errors.

Bibliographic Details
Main Authors: Qiao Fan, Virginie J. M. Verhoeven, Robert Wojciechowski, Veluchamy A. Barathi, Pirro G. Hysi, Jeremy A. Guggenheim, René Höhn, Veronique Vitart, Anthony P. Khawaja, Kenji Yamashiro, S Mohsen Hosseini, Terho Lehtimäki, Yi Lu, Toomas Haller, Jing Xie, Cécile Delcourt, Mario Pirastu, Juho Wedenoja, Puya Gharahkhani, Cristina Venturini, Masahiro Miyake, Alex W. Hewitt, Xiaobo Guo, Johanna Mazur, Jenifer E. Huffman, Katie M. Williams, Ozren Polasek, Harry Campbell, Igor Rudan, Zoran Vatavuk, James F. Wilson, Peter K. Joshi, George McMahon, Beate St Pourcain, David M. Evans, Claire L. Simpson, Tae-Hwi Schwantes-An, Robert P. Igo, Alireza Mirshahi, Audrey Cougnard-Gregoire, Céline Bellenguez, Maria Blettner, Olli Raitakari, Mika Kähönen, Ilkka Seppälä, Tanja Zeller, Thomas Meitinger, Janina S. Ried, Christian Gieger, Laura Portas, Elisabeth M. van Leeuwen, Najaf Amin, André G. Uitterlinden, Fernando Rivadeneira, Albert Hofman, Johannes R. Vingerling, Ya Xing Wang, Xu Wang, Eileen Tai-Hui Boh, M. Kamran Ikram, Charumathi Sabanayagam, Preeti Gupta, Vincent Tan, Lei Zhou, Candice E. H. Ho, Wan’e Lim, Roger W. Beuerman, Rosalynn Siantar, E-Shyong Tai, Eranga Vithana, Evelin Mihailov, Chiea-Chuen Khor, Caroline Hayward, Robert N. Luben, Paul J. Foster, Barbara E. K. Klein, Ronald Klein, Hoi-Suen Wong, Paul Mitchell, Andres Metspalu, Tin Aung, Terri L. Young, Mingguang He, Olavi Pärssinen, Cornelia M. van Duijn, Jie Jin Wang, Cathy Williams, Jost B. Jonas, Yik-Ying Teo, David A. Mackey, Konrad Oexle, Nagahisa Yoshimura, Andrew D. Paterson, Norbert Pfeiffer, Tien-Yin Wong, Paul N. Baird, Dwight Stambolian, Joan E. Bailey Wilson, Ching-Yu Cheng, Christopher J. Hammond, Caroline C. W. Klaver, Seang-Mei Saw, Consortium for Refractive Error and Myopia (CREAM)
Format: Article
Language:English
Published: Nature Publishing Group 2016-04-01
Series:Nature Communications
Online Access:https://doi.org/10.1038/ncomms11008
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author Qiao Fan
Virginie J. M. Verhoeven
Robert Wojciechowski
Veluchamy A. Barathi
Pirro G. Hysi
Jeremy A. Guggenheim
René Höhn
Veronique Vitart
Anthony P. Khawaja
Kenji Yamashiro
S Mohsen Hosseini
Terho Lehtimäki
Yi Lu
Toomas Haller
Jing Xie
Cécile Delcourt
Mario Pirastu
Juho Wedenoja
Puya Gharahkhani
Cristina Venturini
Masahiro Miyake
Alex W. Hewitt
Xiaobo Guo
Johanna Mazur
Jenifer E. Huffman
Katie M. Williams
Ozren Polasek
Harry Campbell
Igor Rudan
Zoran Vatavuk
James F. Wilson
Peter K. Joshi
George McMahon
Beate St Pourcain
David M. Evans
Claire L. Simpson
Tae-Hwi Schwantes-An
Robert P. Igo
Alireza Mirshahi
Audrey Cougnard-Gregoire
Céline Bellenguez
Maria Blettner
Olli Raitakari
Mika Kähönen
Ilkka Seppälä
Tanja Zeller
Thomas Meitinger
Janina S. Ried
Christian Gieger
Laura Portas
Elisabeth M. van Leeuwen
Najaf Amin
André G. Uitterlinden
Fernando Rivadeneira
Albert Hofman
Johannes R. Vingerling
Ya Xing Wang
Xu Wang
Eileen Tai-Hui Boh
M. Kamran Ikram
Charumathi Sabanayagam
Preeti Gupta
Vincent Tan
Lei Zhou
Candice E. H. Ho
Wan’e Lim
Roger W. Beuerman
Rosalynn Siantar
E-Shyong Tai
Eranga Vithana
Evelin Mihailov
Chiea-Chuen Khor
Caroline Hayward
Robert N. Luben
Paul J. Foster
Barbara E. K. Klein
Ronald Klein
Hoi-Suen Wong
Paul Mitchell
Andres Metspalu
Tin Aung
Terri L. Young
Mingguang He
Olavi Pärssinen
Cornelia M. van Duijn
Jie Jin Wang
Cathy Williams
Jost B. Jonas
Yik-Ying Teo
David A. Mackey
Konrad Oexle
Nagahisa Yoshimura
Andrew D. Paterson
Norbert Pfeiffer
Tien-Yin Wong
Paul N. Baird
Dwight Stambolian
Joan E. Bailey Wilson
Ching-Yu Cheng
Christopher J. Hammond
Caroline C. W. Klaver
Seang-Mei Saw
Consortium for Refractive Error and Myopia (CREAM)
spellingShingle Qiao Fan
Virginie J. M. Verhoeven
Robert Wojciechowski
Veluchamy A. Barathi
Pirro G. Hysi
Jeremy A. Guggenheim
René Höhn
Veronique Vitart
Anthony P. Khawaja
Kenji Yamashiro
S Mohsen Hosseini
Terho Lehtimäki
Yi Lu
Toomas Haller
Jing Xie
Cécile Delcourt
Mario Pirastu
Juho Wedenoja
Puya Gharahkhani
Cristina Venturini
Masahiro Miyake
Alex W. Hewitt
Xiaobo Guo
Johanna Mazur
Jenifer E. Huffman
Katie M. Williams
Ozren Polasek
Harry Campbell
Igor Rudan
Zoran Vatavuk
James F. Wilson
Peter K. Joshi
George McMahon
Beate St Pourcain
David M. Evans
Claire L. Simpson
Tae-Hwi Schwantes-An
Robert P. Igo
Alireza Mirshahi
Audrey Cougnard-Gregoire
Céline Bellenguez
Maria Blettner
Olli Raitakari
Mika Kähönen
Ilkka Seppälä
Tanja Zeller
Thomas Meitinger
Janina S. Ried
Christian Gieger
Laura Portas
Elisabeth M. van Leeuwen
Najaf Amin
André G. Uitterlinden
Fernando Rivadeneira
Albert Hofman
Johannes R. Vingerling
Ya Xing Wang
Xu Wang
Eileen Tai-Hui Boh
M. Kamran Ikram
Charumathi Sabanayagam
Preeti Gupta
Vincent Tan
Lei Zhou
Candice E. H. Ho
Wan’e Lim
Roger W. Beuerman
Rosalynn Siantar
E-Shyong Tai
Eranga Vithana
Evelin Mihailov
Chiea-Chuen Khor
Caroline Hayward
Robert N. Luben
Paul J. Foster
Barbara E. K. Klein
Ronald Klein
Hoi-Suen Wong
Paul Mitchell
Andres Metspalu
Tin Aung
Terri L. Young
Mingguang He
Olavi Pärssinen
Cornelia M. van Duijn
Jie Jin Wang
Cathy Williams
Jost B. Jonas
Yik-Ying Teo
David A. Mackey
Konrad Oexle
Nagahisa Yoshimura
Andrew D. Paterson
Norbert Pfeiffer
Tien-Yin Wong
Paul N. Baird
Dwight Stambolian
Joan E. Bailey Wilson
Ching-Yu Cheng
Christopher J. Hammond
Caroline C. W. Klaver
Seang-Mei Saw
Consortium for Refractive Error and Myopia (CREAM)
Meta-analysis of gene–environment-wide association scans accounting for education level identifies additional loci for refractive error
Nature Communications
author_facet Qiao Fan
Virginie J. M. Verhoeven
Robert Wojciechowski
Veluchamy A. Barathi
Pirro G. Hysi
Jeremy A. Guggenheim
René Höhn
Veronique Vitart
Anthony P. Khawaja
Kenji Yamashiro
S Mohsen Hosseini
Terho Lehtimäki
Yi Lu
Toomas Haller
Jing Xie
Cécile Delcourt
Mario Pirastu
Juho Wedenoja
Puya Gharahkhani
Cristina Venturini
Masahiro Miyake
Alex W. Hewitt
Xiaobo Guo
Johanna Mazur
Jenifer E. Huffman
Katie M. Williams
Ozren Polasek
Harry Campbell
Igor Rudan
Zoran Vatavuk
James F. Wilson
Peter K. Joshi
George McMahon
Beate St Pourcain
David M. Evans
Claire L. Simpson
Tae-Hwi Schwantes-An
Robert P. Igo
Alireza Mirshahi
Audrey Cougnard-Gregoire
Céline Bellenguez
Maria Blettner
Olli Raitakari
Mika Kähönen
Ilkka Seppälä
Tanja Zeller
Thomas Meitinger
Janina S. Ried
Christian Gieger
Laura Portas
Elisabeth M. van Leeuwen
Najaf Amin
André G. Uitterlinden
Fernando Rivadeneira
Albert Hofman
Johannes R. Vingerling
Ya Xing Wang
Xu Wang
Eileen Tai-Hui Boh
M. Kamran Ikram
Charumathi Sabanayagam
Preeti Gupta
Vincent Tan
Lei Zhou
Candice E. H. Ho
Wan’e Lim
Roger W. Beuerman
Rosalynn Siantar
E-Shyong Tai
Eranga Vithana
Evelin Mihailov
Chiea-Chuen Khor
Caroline Hayward
Robert N. Luben
Paul J. Foster
Barbara E. K. Klein
Ronald Klein
Hoi-Suen Wong
Paul Mitchell
Andres Metspalu
Tin Aung
Terri L. Young
Mingguang He
Olavi Pärssinen
Cornelia M. van Duijn
Jie Jin Wang
Cathy Williams
Jost B. Jonas
Yik-Ying Teo
David A. Mackey
Konrad Oexle
Nagahisa Yoshimura
Andrew D. Paterson
Norbert Pfeiffer
Tien-Yin Wong
Paul N. Baird
Dwight Stambolian
Joan E. Bailey Wilson
Ching-Yu Cheng
Christopher J. Hammond
Caroline C. W. Klaver
Seang-Mei Saw
Consortium for Refractive Error and Myopia (CREAM)
author_sort Qiao Fan
title Meta-analysis of gene–environment-wide association scans accounting for education level identifies additional loci for refractive error
title_short Meta-analysis of gene–environment-wide association scans accounting for education level identifies additional loci for refractive error
title_full Meta-analysis of gene–environment-wide association scans accounting for education level identifies additional loci for refractive error
title_fullStr Meta-analysis of gene–environment-wide association scans accounting for education level identifies additional loci for refractive error
title_full_unstemmed Meta-analysis of gene–environment-wide association scans accounting for education level identifies additional loci for refractive error
title_sort meta-analysis of gene–environment-wide association scans accounting for education level identifies additional loci for refractive error
publisher Nature Publishing Group
series Nature Communications
issn 2041-1723
publishDate 2016-04-01
description This report by the Consortium for Refractive Error and Myopia uses gene-environment-wide interaction study (GEWIS) to identify genetic loci that affect environmental influence in myopia development, and identifies ethnic specific genetic loci that attribute to eye refractive errors.
url https://doi.org/10.1038/ncomms11008
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spelling doaj-b0563139c510416e9a4da61510e1f5d42021-05-11T10:37:46ZengNature Publishing GroupNature Communications2041-17232016-04-017111210.1038/ncomms11008Meta-analysis of gene–environment-wide association scans accounting for education level identifies additional loci for refractive errorQiao Fan0Virginie J. M. Verhoeven1Robert Wojciechowski2Veluchamy A. Barathi3Pirro G. Hysi4Jeremy A. Guggenheim5René Höhn6Veronique Vitart7Anthony P. Khawaja8Kenji Yamashiro9S Mohsen Hosseini10Terho Lehtimäki11Yi Lu12Toomas Haller13Jing Xie14Cécile Delcourt15Mario Pirastu16Juho Wedenoja17Puya Gharahkhani18Cristina Venturini19Masahiro Miyake20Alex W. Hewitt21Xiaobo Guo22Johanna Mazur23Jenifer E. Huffman24Katie M. Williams25Ozren Polasek26Harry Campbell27Igor Rudan28Zoran Vatavuk29James F. Wilson30Peter K. Joshi31George McMahon32Beate St Pourcain33David M. Evans34Claire L. Simpson35Tae-Hwi Schwantes-An36Robert P. Igo37Alireza Mirshahi38Audrey Cougnard-Gregoire39Céline Bellenguez40Maria Blettner41Olli Raitakari42Mika Kähönen43Ilkka Seppälä44Tanja Zeller45Thomas Meitinger46Janina S. Ried47Christian Gieger48Laura Portas49Elisabeth M. van Leeuwen50Najaf Amin51André G. Uitterlinden52Fernando Rivadeneira53Albert Hofman54Johannes R. Vingerling55Ya Xing Wang56Xu Wang57Eileen Tai-Hui Boh58M. Kamran Ikram59Charumathi Sabanayagam60Preeti Gupta61Vincent Tan62Lei Zhou63Candice E. H. Ho64Wan’e Lim65Roger W. Beuerman66Rosalynn Siantar67E-Shyong Tai68Eranga Vithana69Evelin Mihailov70Chiea-Chuen Khor71Caroline Hayward72Robert N. Luben73Paul J. Foster74Barbara E. K. Klein75Ronald Klein76Hoi-Suen Wong77Paul Mitchell78Andres Metspalu79Tin Aung80Terri L. Young81Mingguang He82Olavi Pärssinen83Cornelia M. van Duijn84Jie Jin Wang85Cathy Williams86Jost B. Jonas87Yik-Ying Teo88David A. Mackey89Konrad Oexle90Nagahisa Yoshimura91Andrew D. Paterson92Norbert Pfeiffer93Tien-Yin Wong94Paul N. Baird95Dwight Stambolian96Joan E. Bailey Wilson97Ching-Yu Cheng98Christopher J. Hammond99Caroline C. W. Klaver100Seang-Mei Saw101Consortium for Refractive Error and Myopia (CREAM)Singapore Eye Research Institute, Singapore National Eye CentreDepartment of Ophthalmology, Erasmus Medical CenterComputational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of HealthSingapore Eye Research Institute, Singapore National Eye CentreDepartment of Twin Research and Genetic Epidemiology, King’s College London School of MedicineSchool of Optometry and Vision Sciences, Cardiff UniversityDepartment of Ophthalmology, University Medical Center MainzMedical Research Council Human Genetics Unit, Institute of Genetics and Molecular Medicine, University of EdinburghDepartment of Public Health and Primary Care, Institute of Public Health, University of Cambridge School of Clinical MedicineDepartment of Ophthalmology and Visual Sciences, Kyoto University Graduate School of MedicineProgram in Genetics and Genome Biology, The Hospital for Sick Children and Institute for Medical Sciences, University of TorontoDepartment of Clinical Chemistry, Fimlab Laboratories and School of Medicine, University of TampereStatistical Genetics Laboratory, QIMR Berghofer Medical Research Institute, HerstonEstonian Genome Center, University of TartuCentre for Eye Research Australia (CERA), Royal Victorian Eye and Ear Hospital, University of MelbourneUniversité de Bordeaux, ISPED (Institut de Santé Publique d'Épidémiologie et de Développement)Institute of Population Genetics, National Research CouncilDepartment of Public Health, University of HelsinkiStatistical Genetics Laboratory, QIMR Berghofer Medical Research Institute, HerstonDepartment of Twin Research and Genetic Epidemiology, King’s College London School of MedicineDepartment of Ophthalmology and Visual Sciences, Kyoto University Graduate School of MedicineCentre for Eye Research Australia (CERA), Royal Victorian Eye and Ear Hospital, University of MelbourneDepartment of Statistical Science, School of Mathematics and Computational Science, Sun Yat-Sen UniversityInstitute of Medical Biostatistics, Epidemiology and Informatics, University Medical Center MainzMedical Research Council Human Genetics Unit, Institute of Genetics and Molecular Medicine, University of EdinburghDepartment of Twin Research and Genetic Epidemiology, King’s College London School of MedicineFaculty of Medicine, University of SplitUsher Institute for Population Health Sciences and Informatics, University of EdinburghUsher Institute for Population Health Sciences and Informatics, University of EdinburghDepartment of Ophthalmology, Sisters of Mercy University HospitalUsher Institute for Population Health Sciences and Informatics, University of EdinburghUsher Institute for Population Health Sciences and Informatics, University of EdinburghMRC Integrative Epidemiology Unit (IEU), University of BristolMRC Integrative Epidemiology Unit (IEU), University of BristolMRC Integrative Epidemiology Unit (IEU), University of BristolComputational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of HealthComputational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of HealthDepartment of Epidemiology and Biostatistics, Case Western Reserve UniversityDepartment of Ophthalmology, University Medical Center MainzUniversité de Bordeaux, ISPED (Institut de Santé Publique d'Épidémiologie et de Développement)Inserm, U1167Institute of Medical Biostatistics, Epidemiology and Informatics, University Medical Center MainzResearch Centre of Applied and Preventive Medicine, University of TurkuDepartment of Clinical Physiology, Tampere University Hospital and School of Medicine, University of TampereDepartment of Clinical Chemistry, Fimlab Laboratories and School of Medicine, University of TampereClinic for General and Interventional Cardiology, University Heart Center HamburgInstitute of Human Genetics, Helmholtz Zentrum MünchenInstitute of Genetic Epidemiology, Helmholtz Zentrum München—German Research Center for Environmental HealthInstitute of Genetic Epidemiology, Helmholtz Zentrum München—German Research Center for Environmental HealthInstitute of Population Genetics, National Research CouncilDepartment of Epidemiology, Erasmus Medical CenterDepartment of Epidemiology, Erasmus Medical CenterDepartment of Epidemiology, Erasmus Medical CenterDepartment of Epidemiology, Erasmus Medical CenterDepartment of Epidemiology, Erasmus Medical CenterDepartment of Ophthalmology, Erasmus Medical CenterBeijing Institute of Ophthalmology, Beijing Tongren Hospital, Capital Medical UniversitySaw Swee Hock School of Public Health, National University of Singapore and National University Health SystemsSaw Swee Hock School of Public Health, National University of Singapore and National University Health SystemsSingapore Eye Research Institute, Singapore National Eye CentreSingapore Eye Research Institute, Singapore National Eye CentreSingapore Eye Research Institute, Singapore National Eye CentreSingapore Eye Research Institute, Singapore National Eye CentreSingapore Eye Research Institute, Singapore National Eye CentreSingapore Eye Research Institute, Singapore National Eye CentreDepartment of Ophthalmology, National University Health Systems, National University of SingaporeSingapore Eye Research Institute, Singapore National Eye CentreSingapore Eye Research Institute, Singapore National Eye CentreDuke-NUS Medical SchoolSingapore Eye Research Institute, Singapore National Eye CentreEstonian Genome Center, University of TartuSingapore Eye Research Institute, Singapore National Eye CentreMedical Research Council Human Genetics Unit, Institute of Genetics and Molecular Medicine, University of EdinburghDepartment of Public Health and Primary Care, Institute of Public Health, University of Cambridge School of Clinical MedicineDivision of Genetics and Epidemiology, UCL Institute of OphthalmologyDepartment of Ophthalmology and Visual Sciences, University of Wisconsin School of Medicine and Public HealthDepartment of Ophthalmology and Visual Sciences, University of Wisconsin School of Medicine and Public HealthProgram in Genetics and Genome Biology, The Hospital for Sick Children and Institute for Medical Sciences, University of TorontoDepartment of Ophthalmology, Centre for Vision Research, Westmead Institute for Medical Research, University of Sydney, Sydney, New South Wales 2145, AustraliaEstonian Genome Center, University of TartuSingapore Eye Research Institute, Singapore National Eye CentreDepartment of Ophthalmology and Visual Sciences, School of Medicine and Public Health, University of WisconsinState Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center, Sun Yat-Sen UniversityDepartment of Ophthalmology, Central Hospital of Central FinlandDepartment of Epidemiology, Erasmus Medical CenterDepartment of Ophthalmology, Centre for Vision Research, Westmead Institute for Medical Research, University of Sydney, Sydney, New South Wales 2145, AustraliaSchool of Social and Community Medicine, University of BristolBeijing Institute of Ophthalmology, Beijing Tongren Hospital, Capital Medical UniversitySaw Swee Hock School of Public Health, National University of Singapore and National University Health SystemsMenzies Research Institute Tasmania, University of TasmaniaInstitute of Human Genetics, Klinikum rechts der Isar, Technische Universität MünchenDepartment of Ophthalmology and Visual Sciences, Kyoto University Graduate School of MedicineProgram in Genetics and Genome Biology, The Hospital for Sick Children and Institute for Medical Sciences, University of TorontoDepartment of Ophthalmology, University Medical Center MainzSingapore Eye Research Institute, Singapore National Eye CentreCentre for Eye Research Australia (CERA), Royal Victorian Eye and Ear Hospital, University of MelbourneDepartment of Ophthalmology, University of PennsylvaniaComputational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of HealthSingapore Eye Research Institute, Singapore National Eye CentreDepartment of Twin Research and Genetic Epidemiology, King’s College London School of MedicineDepartment of Ophthalmology, Erasmus Medical CenterSingapore Eye Research Institute, Singapore National Eye CentreThis report by the Consortium for Refractive Error and Myopia uses gene-environment-wide interaction study (GEWIS) to identify genetic loci that affect environmental influence in myopia development, and identifies ethnic specific genetic loci that attribute to eye refractive errors.https://doi.org/10.1038/ncomms11008