Donkey genomes provide new insights into domestication and selection for coat color

A new donkey reference genome and comparisons with wild asses yields insights into the evolutionary history of donkey domestication and identifies a genetic variant that results in the non-Dun coat colours of domestic donkeys.

Bibliographic Details
Main Authors: Changfa Wang, Haijing Li, Yu Guo, Jinming Huang, Yan Sun, Jiumeng Min, Jinpeng Wang, Xiaodong Fang, Zicheng Zhao, Shuai Wang, Yanlin Zhang, Qingfeng Liu, Qiang Jiang, Xiuge Wang, Yijun Guo, Chunhong Yang, Yinchao Wang, Fang Tian, Guilong Zhuang, Yanna Fan, Qican Gao, Yuhua Li, Zhihua Ju, Jianbin Li, Rongling Li, Minghai Hou, Guiwen Yang, Guiqin Liu, Wenqiang Liu, Jiao Guo, Shanshan Pan, Guangyi Fan, Wei Zhang, Ruitao Zhang, Jie Yu, Xinhao Zhang, Qi Yin, Chuanliang Ji, Yuanchun Jin, Guidong Yue, Mei Liu, Jiake Xu, Shimin Liu, Jordi Jordana, Antonia Noce, Marcel Amills, Dong Dong Wu, Shuaicheng Li, Xiangshan Zhou, Jifeng Zhong
Format: Article
Language:English
Published: Nature Publishing Group 2020-12-01
Series:Nature Communications
Online Access:https://doi.org/10.1038/s41467-020-19813-7
id doaj-b73ca888ab164aae8882064ae4bd5df0
record_format Article
collection DOAJ
language English
format Article
sources DOAJ
author Changfa Wang
Haijing Li
Yu Guo
Jinming Huang
Yan Sun
Jiumeng Min
Jinpeng Wang
Xiaodong Fang
Zicheng Zhao
Shuai Wang
Yanlin Zhang
Qingfeng Liu
Qiang Jiang
Xiuge Wang
Yijun Guo
Chunhong Yang
Yinchao Wang
Fang Tian
Guilong Zhuang
Yanna Fan
Qican Gao
Yuhua Li
Zhihua Ju
Jianbin Li
Rongling Li
Minghai Hou
Guiwen Yang
Guiqin Liu
Wenqiang Liu
Jiao Guo
Shanshan Pan
Guangyi Fan
Wei Zhang
Ruitao Zhang
Jie Yu
Xinhao Zhang
Qi Yin
Chuanliang Ji
Yuanchun Jin
Guidong Yue
Mei Liu
Jiake Xu
Shimin Liu
Jordi Jordana
Antonia Noce
Marcel Amills
Dong Dong Wu
Shuaicheng Li
Xiangshan Zhou
Jifeng Zhong
spellingShingle Changfa Wang
Haijing Li
Yu Guo
Jinming Huang
Yan Sun
Jiumeng Min
Jinpeng Wang
Xiaodong Fang
Zicheng Zhao
Shuai Wang
Yanlin Zhang
Qingfeng Liu
Qiang Jiang
Xiuge Wang
Yijun Guo
Chunhong Yang
Yinchao Wang
Fang Tian
Guilong Zhuang
Yanna Fan
Qican Gao
Yuhua Li
Zhihua Ju
Jianbin Li
Rongling Li
Minghai Hou
Guiwen Yang
Guiqin Liu
Wenqiang Liu
Jiao Guo
Shanshan Pan
Guangyi Fan
Wei Zhang
Ruitao Zhang
Jie Yu
Xinhao Zhang
Qi Yin
Chuanliang Ji
Yuanchun Jin
Guidong Yue
Mei Liu
Jiake Xu
Shimin Liu
Jordi Jordana
Antonia Noce
Marcel Amills
Dong Dong Wu
Shuaicheng Li
Xiangshan Zhou
Jifeng Zhong
Donkey genomes provide new insights into domestication and selection for coat color
Nature Communications
author_facet Changfa Wang
Haijing Li
Yu Guo
Jinming Huang
Yan Sun
Jiumeng Min
Jinpeng Wang
Xiaodong Fang
Zicheng Zhao
Shuai Wang
Yanlin Zhang
Qingfeng Liu
Qiang Jiang
Xiuge Wang
Yijun Guo
Chunhong Yang
Yinchao Wang
Fang Tian
Guilong Zhuang
Yanna Fan
Qican Gao
Yuhua Li
Zhihua Ju
Jianbin Li
Rongling Li
Minghai Hou
Guiwen Yang
Guiqin Liu
Wenqiang Liu
Jiao Guo
Shanshan Pan
Guangyi Fan
Wei Zhang
Ruitao Zhang
Jie Yu
Xinhao Zhang
Qi Yin
Chuanliang Ji
Yuanchun Jin
Guidong Yue
Mei Liu
Jiake Xu
Shimin Liu
Jordi Jordana
Antonia Noce
Marcel Amills
Dong Dong Wu
Shuaicheng Li
Xiangshan Zhou
Jifeng Zhong
author_sort Changfa Wang
title Donkey genomes provide new insights into domestication and selection for coat color
title_short Donkey genomes provide new insights into domestication and selection for coat color
title_full Donkey genomes provide new insights into domestication and selection for coat color
title_fullStr Donkey genomes provide new insights into domestication and selection for coat color
title_full_unstemmed Donkey genomes provide new insights into domestication and selection for coat color
title_sort donkey genomes provide new insights into domestication and selection for coat color
publisher Nature Publishing Group
series Nature Communications
issn 2041-1723
publishDate 2020-12-01
description A new donkey reference genome and comparisons with wild asses yields insights into the evolutionary history of donkey domestication and identifies a genetic variant that results in the non-Dun coat colours of domestic donkeys.
url https://doi.org/10.1038/s41467-020-19813-7
work_keys_str_mv AT changfawang donkeygenomesprovidenewinsightsintodomesticationandselectionforcoatcolor
AT haijingli donkeygenomesprovidenewinsightsintodomesticationandselectionforcoatcolor
AT yuguo donkeygenomesprovidenewinsightsintodomesticationandselectionforcoatcolor
AT jinminghuang donkeygenomesprovidenewinsightsintodomesticationandselectionforcoatcolor
AT yansun donkeygenomesprovidenewinsightsintodomesticationandselectionforcoatcolor
AT jiumengmin donkeygenomesprovidenewinsightsintodomesticationandselectionforcoatcolor
AT jinpengwang donkeygenomesprovidenewinsightsintodomesticationandselectionforcoatcolor
AT xiaodongfang donkeygenomesprovidenewinsightsintodomesticationandselectionforcoatcolor
AT zichengzhao donkeygenomesprovidenewinsightsintodomesticationandselectionforcoatcolor
AT shuaiwang donkeygenomesprovidenewinsightsintodomesticationandselectionforcoatcolor
AT yanlinzhang donkeygenomesprovidenewinsightsintodomesticationandselectionforcoatcolor
AT qingfengliu donkeygenomesprovidenewinsightsintodomesticationandselectionforcoatcolor
AT qiangjiang donkeygenomesprovidenewinsightsintodomesticationandselectionforcoatcolor
AT xiugewang donkeygenomesprovidenewinsightsintodomesticationandselectionforcoatcolor
AT yijunguo donkeygenomesprovidenewinsightsintodomesticationandselectionforcoatcolor
AT chunhongyang donkeygenomesprovidenewinsightsintodomesticationandselectionforcoatcolor
AT yinchaowang donkeygenomesprovidenewinsightsintodomesticationandselectionforcoatcolor
AT fangtian donkeygenomesprovidenewinsightsintodomesticationandselectionforcoatcolor
AT guilongzhuang donkeygenomesprovidenewinsightsintodomesticationandselectionforcoatcolor
AT yannafan donkeygenomesprovidenewinsightsintodomesticationandselectionforcoatcolor
AT qicangao donkeygenomesprovidenewinsightsintodomesticationandselectionforcoatcolor
AT yuhuali donkeygenomesprovidenewinsightsintodomesticationandselectionforcoatcolor
AT zhihuaju donkeygenomesprovidenewinsightsintodomesticationandselectionforcoatcolor
AT jianbinli donkeygenomesprovidenewinsightsintodomesticationandselectionforcoatcolor
AT ronglingli donkeygenomesprovidenewinsightsintodomesticationandselectionforcoatcolor
AT minghaihou donkeygenomesprovidenewinsightsintodomesticationandselectionforcoatcolor
AT guiwenyang donkeygenomesprovidenewinsightsintodomesticationandselectionforcoatcolor
AT guiqinliu donkeygenomesprovidenewinsightsintodomesticationandselectionforcoatcolor
AT wenqiangliu donkeygenomesprovidenewinsightsintodomesticationandselectionforcoatcolor
AT jiaoguo donkeygenomesprovidenewinsightsintodomesticationandselectionforcoatcolor
AT shanshanpan donkeygenomesprovidenewinsightsintodomesticationandselectionforcoatcolor
AT guangyifan donkeygenomesprovidenewinsightsintodomesticationandselectionforcoatcolor
AT weizhang donkeygenomesprovidenewinsightsintodomesticationandselectionforcoatcolor
AT ruitaozhang donkeygenomesprovidenewinsightsintodomesticationandselectionforcoatcolor
AT jieyu donkeygenomesprovidenewinsightsintodomesticationandselectionforcoatcolor
AT xinhaozhang donkeygenomesprovidenewinsightsintodomesticationandselectionforcoatcolor
AT qiyin donkeygenomesprovidenewinsightsintodomesticationandselectionforcoatcolor
AT chuanliangji donkeygenomesprovidenewinsightsintodomesticationandselectionforcoatcolor
AT yuanchunjin donkeygenomesprovidenewinsightsintodomesticationandselectionforcoatcolor
AT guidongyue donkeygenomesprovidenewinsightsintodomesticationandselectionforcoatcolor
AT meiliu donkeygenomesprovidenewinsightsintodomesticationandselectionforcoatcolor
AT jiakexu donkeygenomesprovidenewinsightsintodomesticationandselectionforcoatcolor
AT shiminliu donkeygenomesprovidenewinsightsintodomesticationandselectionforcoatcolor
AT jordijordana donkeygenomesprovidenewinsightsintodomesticationandselectionforcoatcolor
AT antonianoce donkeygenomesprovidenewinsightsintodomesticationandselectionforcoatcolor
AT marcelamills donkeygenomesprovidenewinsightsintodomesticationandselectionforcoatcolor
AT dongdongwu donkeygenomesprovidenewinsightsintodomesticationandselectionforcoatcolor
AT shuaichengli donkeygenomesprovidenewinsightsintodomesticationandselectionforcoatcolor
AT xiangshanzhou donkeygenomesprovidenewinsightsintodomesticationandselectionforcoatcolor
AT jifengzhong donkeygenomesprovidenewinsightsintodomesticationandselectionforcoatcolor
_version_ 1724316990885068800
spelling doaj-b73ca888ab164aae8882064ae4bd5df02021-01-31T14:02:05ZengNature Publishing GroupNature Communications2041-17232020-12-0111111510.1038/s41467-020-19813-7Donkey genomes provide new insights into domestication and selection for coat colorChangfa Wang0Haijing Li1Yu Guo2Jinming Huang3Yan Sun4Jiumeng Min5Jinpeng Wang6Xiaodong Fang7Zicheng Zhao8Shuai Wang9Yanlin Zhang10Qingfeng Liu11Qiang Jiang12Xiuge Wang13Yijun Guo14Chunhong Yang15Yinchao Wang16Fang Tian17Guilong Zhuang18Yanna Fan19Qican Gao20Yuhua Li21Zhihua Ju22Jianbin Li23Rongling Li24Minghai Hou25Guiwen Yang26Guiqin Liu27Wenqiang Liu28Jiao Guo29Shanshan Pan30Guangyi Fan31Wei Zhang32Ruitao Zhang33Jie Yu34Xinhao Zhang35Qi Yin36Chuanliang Ji37Yuanchun Jin38Guidong Yue39Mei Liu40Jiake Xu41Shimin Liu42Jordi Jordana43Antonia Noce44Marcel Amills45Dong Dong Wu46Shuaicheng Li47Xiangshan Zhou48Jifeng Zhong49Dairy Cattle Research Center, Shandong Academy of Agricultural SciencesNational Engineering Research Center for Gelatin-based Traditional Chinese Medicine, Dong-E-E-Jiao Co. LtdBGI-ShenzhenDairy Cattle Research Center, Shandong Academy of Agricultural SciencesDairy Cattle Research Center, Shandong Academy of Agricultural SciencesBGI-ShenzhenDairy Cattle Research Center, Shandong Academy of Agricultural SciencesBGI-ShenzhenDepartment of Computer Science, City University of Hong KongDepartment of Computer Science, City University of Hong KongDepartment of Computer Science, City University of Hong KongBGI-ShenzhenDairy Cattle Research Center, Shandong Academy of Agricultural SciencesDairy Cattle Research Center, Shandong Academy of Agricultural SciencesDairy Cattle Research Center, Shandong Academy of Agricultural SciencesDairy Cattle Research Center, Shandong Academy of Agricultural SciencesNational Engineering Research Center for Gelatin-based Traditional Chinese Medicine, Dong-E-E-Jiao Co. LtdNational Engineering Research Center for Gelatin-based Traditional Chinese Medicine, Dong-E-E-Jiao Co. LtdDairy Cattle Research Center, Shandong Academy of Agricultural SciencesDairy Cattle Research Center, Shandong Academy of Agricultural SciencesDairy Cattle Research Center, Shandong Academy of Agricultural SciencesLiaocheng Research Institute of Donkey High-Efficiency Breeding and Ecological Feeding, Liaocheng UniversityDairy Cattle Research Center, Shandong Academy of Agricultural SciencesDairy Cattle Research Center, Shandong Academy of Agricultural SciencesDairy Cattle Research Center, Shandong Academy of Agricultural SciencesDairy Cattle Research Center, Shandong Academy of Agricultural SciencesCollege of Life Science, Shandong Normal UniversityLiaocheng Research Institute of Donkey High-Efficiency Breeding and Ecological Feeding, Liaocheng UniversityLiaocheng Research Institute of Donkey High-Efficiency Breeding and Ecological Feeding, Liaocheng UniversityBGI-Qingdao, BGI-ShenzhenBGI-Qingdao, BGI-ShenzhenBGI-Qingdao, BGI-ShenzhenDairy Cattle Research Center, Shandong Academy of Agricultural SciencesLiaocheng Research Institute of Donkey High-Efficiency Breeding and Ecological Feeding, Liaocheng UniversityNational Engineering Research Center for Gelatin-based Traditional Chinese Medicine, Dong-E-E-Jiao Co. LtdNational Engineering Research Center for Gelatin-based Traditional Chinese Medicine, Dong-E-E-Jiao Co. LtdBGI-ShenzhenNational Engineering Research Center for Gelatin-based Traditional Chinese Medicine, Dong-E-E-Jiao Co. LtdBGI-ShenzhenBGI-ShenzhenJiangsu Key Laboratory for Molecular and Medical Biotechnology, Nanjing Normal UniversitySchool of Biomedical Sciences, The University of Western Australia M508Department de Ciència Animal idels Aliments, Facultat de Veterinària, Universitat Autònoma de BarcelonaDepartment de Ciència Animal idels Aliments, Facultat de Veterinària, Universitat Autònoma de BarcelonaDepartment de Ciència Animal idels Aliments, Facultat de Veterinària, Universitat Autònoma de BarcelonaDepartment de Ciència Animal idels Aliments, Facultat de Veterinària, Universitat Autònoma de BarcelonaState Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of SciencesDepartment of Computer Science, City University of Hong KongNational Engineering Research Center for Gelatin-based Traditional Chinese Medicine, Dong-E-E-Jiao Co. LtdDairy Cattle Research Center, Shandong Academy of Agricultural SciencesA new donkey reference genome and comparisons with wild asses yields insights into the evolutionary history of donkey domestication and identifies a genetic variant that results in the non-Dun coat colours of domestic donkeys.https://doi.org/10.1038/s41467-020-19813-7