Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities
Silvia Acinas et al. report the Malaspina Gene Database, a gene catalogue from deep ocean microbes and the Malaspina Deep Metagenome-Assembled Genomes (MAGs) which is made publicly available. The analysis of the metabolic pathways within these MAGs sheds light on the composition and of the strategie...
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| Format: | Article |
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Nature Publishing Group
2021-05-01
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| Series: | Communications Biology |
| Online Access: | https://doi.org/10.1038/s42003-021-02112-2 |
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doaj-be3e27ddfe534fecaa61746dc6fedca42021-05-23T11:28:46ZengNature Publishing GroupCommunications Biology2399-36422021-05-014111510.1038/s42003-021-02112-2Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communitiesSilvia G. Acinas0Pablo Sánchez1Guillem Salazar2Francisco M. Cornejo-Castillo3Marta Sebastián4Ramiro Logares5Marta Royo-Llonch6Lucas Paoli7Shinichi Sunagawa8Pascal Hingamp9Hiroyuki Ogata10Gipsi Lima-Mendez11Simon Roux12José M. González13Jesús M. Arrieta14Intikhab S. Alam15Allan Kamau16Chris Bowler17Jeroen Raes18Stéphane Pesant19Peer Bork20Susana Agustí21Takashi Gojobori22Dolors Vaqué23Matthew B. Sullivan24Carlos Pedrós-Alió25Ramon Massana26Carlos M. Duarte27Josep M. Gasol28Department of Marine Biology and Oceanography, Institute of Marine Sciences (ICM), CSICDepartment of Marine Biology and Oceanography, Institute of Marine Sciences (ICM), CSICDepartment of Marine Biology and Oceanography, Institute of Marine Sciences (ICM), CSICDepartment of Marine Biology and Oceanography, Institute of Marine Sciences (ICM), CSICDepartment of Marine Biology and Oceanography, Institute of Marine Sciences (ICM), CSICDepartment of Marine Biology and Oceanography, Institute of Marine Sciences (ICM), CSICDepartment of Marine Biology and Oceanography, Institute of Marine Sciences (ICM), CSICDepartment of Biology, Institute of Microbiology and Swiss Institute of Bioinformatics, ETH ZurichDepartment of Biology, Institute of Microbiology and Swiss Institute of Bioinformatics, ETH ZurichAix Marseille Univ., Université de Toulon, CNRSInstitute for Chemical Research, Kyoto UniversityCellular and Molecular Microbiology, Faculté des Sciences, Université libre de Bruxelles (ULB)Department of Microbiology, The Ohio State UniversityDepartment of Microbiology, University of La LagunaSpanish Institute of Oceanography (IEO), Oceanographic Center of The Canary Islands, Dársena PesqueraKing Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC)King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC)Institut de Biologie de l’ENS (IBENS), Département de biologie, École normale supérieure, CNRS, INSERM, Université PSLDepartment of Microbiology and Immunology, Rega Institute, KU Leuven – University of LeuvenEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome CampusStructural and Computational Biology, European Molecular Biology LaboratoryKing Abdullah University of Science and Technology (KAUST), Red Sea Research Center (RSRC)King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC)Department of Marine Biology and Oceanography, Institute of Marine Sciences (ICM), CSICDepartment of Microbiology and Civil Environmental and Geodetic Engineering, The Ohio State UniversityDepartment of Systems Biology, Centro Nacional de Biotecnología (CNB), CSICDepartment of Marine Biology and Oceanography, Institute of Marine Sciences (ICM), CSICKing Abdullah University of Science and Technology (KAUST), Red Sea Research Center (RSRC) and Computational Bioscience Research Center (CBRC)Department of Marine Biology and Oceanography, Institute of Marine Sciences (ICM), CSICSilvia Acinas et al. report the Malaspina Gene Database, a gene catalogue from deep ocean microbes and the Malaspina Deep Metagenome-Assembled Genomes (MAGs) which is made publicly available. The analysis of the metabolic pathways within these MAGs sheds light on the composition and of the strategies these microbes use to survive the deep ocean microbiome.https://doi.org/10.1038/s42003-021-02112-2 |
| collection |
DOAJ |
| language |
English |
| format |
Article |
| sources |
DOAJ |
| author |
Silvia G. Acinas Pablo Sánchez Guillem Salazar Francisco M. Cornejo-Castillo Marta Sebastián Ramiro Logares Marta Royo-Llonch Lucas Paoli Shinichi Sunagawa Pascal Hingamp Hiroyuki Ogata Gipsi Lima-Mendez Simon Roux José M. González Jesús M. Arrieta Intikhab S. Alam Allan Kamau Chris Bowler Jeroen Raes Stéphane Pesant Peer Bork Susana Agustí Takashi Gojobori Dolors Vaqué Matthew B. Sullivan Carlos Pedrós-Alió Ramon Massana Carlos M. Duarte Josep M. Gasol |
| spellingShingle |
Silvia G. Acinas Pablo Sánchez Guillem Salazar Francisco M. Cornejo-Castillo Marta Sebastián Ramiro Logares Marta Royo-Llonch Lucas Paoli Shinichi Sunagawa Pascal Hingamp Hiroyuki Ogata Gipsi Lima-Mendez Simon Roux José M. González Jesús M. Arrieta Intikhab S. Alam Allan Kamau Chris Bowler Jeroen Raes Stéphane Pesant Peer Bork Susana Agustí Takashi Gojobori Dolors Vaqué Matthew B. Sullivan Carlos Pedrós-Alió Ramon Massana Carlos M. Duarte Josep M. Gasol Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities Communications Biology |
| author_facet |
Silvia G. Acinas Pablo Sánchez Guillem Salazar Francisco M. Cornejo-Castillo Marta Sebastián Ramiro Logares Marta Royo-Llonch Lucas Paoli Shinichi Sunagawa Pascal Hingamp Hiroyuki Ogata Gipsi Lima-Mendez Simon Roux José M. González Jesús M. Arrieta Intikhab S. Alam Allan Kamau Chris Bowler Jeroen Raes Stéphane Pesant Peer Bork Susana Agustí Takashi Gojobori Dolors Vaqué Matthew B. Sullivan Carlos Pedrós-Alió Ramon Massana Carlos M. Duarte Josep M. Gasol |
| author_sort |
Silvia G. Acinas |
| title |
Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities |
| title_short |
Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities |
| title_full |
Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities |
| title_fullStr |
Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities |
| title_full_unstemmed |
Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities |
| title_sort |
deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities |
| publisher |
Nature Publishing Group |
| series |
Communications Biology |
| issn |
2399-3642 |
| publishDate |
2021-05-01 |
| description |
Silvia Acinas et al. report the Malaspina Gene Database, a gene catalogue from deep ocean microbes and the Malaspina Deep Metagenome-Assembled Genomes (MAGs) which is made publicly available. The analysis of the metabolic pathways within these MAGs sheds light on the composition and of the strategies these microbes use to survive the deep ocean microbiome. |
| url |
https://doi.org/10.1038/s42003-021-02112-2 |
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