Best Foot Forward: Nanopore Long Reads, Hybrid Meta-Assembly, and Haplotig Purging Optimizes the First Genome Assembly for the Southern Hemisphere Blacklip Abalone (Haliotis rubra)

Bibliographic Details
Main Authors:	Han Ming Gan, Mun Hua Tan, Christopher M. Austin, Craig D. H. Sherman, Yen Ting Wong, Jan Strugnell, Mark Gervis, Luke McPherson, Adam D. Miller
Format:	Article
Language:	English
Published:	Frontiers Media S.A. 2019-09-01
Series:	Frontiers in Genetics
Subjects:	abalone Oxford Nanopore hybrid assembly heterozygosity Haliotis heat shock protein 70
Online Access:	https://www.frontiersin.org/article/10.3389/fgene.2019.00889/full

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spelling	doaj-bf42862768254fd8a3d2a9186e671b302020-11-25T01:51:13ZengFrontiers Media S.A.Frontiers in Genetics1664-80212019-09-011010.3389/fgene.2019.00889464131Best Foot Forward: Nanopore Long Reads, Hybrid Meta-Assembly, and Haplotig Purging Optimizes the First Genome Assembly for the Southern Hemisphere Blacklip Abalone (Haliotis rubra)Han Ming Gan0Han Ming Gan1Mun Hua Tan2Mun Hua Tan3Christopher M. Austin4Christopher M. Austin5Craig D. H. Sherman6Craig D. H. Sherman7Yen Ting Wong8Yen Ting Wong9Jan Strugnell10Mark Gervis11Luke McPherson12Adam D. Miller13Adam D. Miller14Centre for Integrative Ecology, School of Life and Environmental Sciences, Deakin University, Geelong, VIC, AustraliaDeakin Genomics Centre, Deakin University, Geelong, VIC, AustraliaCentre for Integrative Ecology, School of Life and Environmental Sciences, Deakin University, Geelong, VIC, AustraliaDeakin Genomics Centre, Deakin University, Geelong, VIC, AustraliaCentre for Integrative Ecology, School of Life and Environmental Sciences, Deakin University, Geelong, VIC, AustraliaDeakin Genomics Centre, Deakin University, Geelong, VIC, AustraliaCentre for Integrative Ecology, School of Life and Environmental Sciences, Deakin University, Geelong, VIC, AustraliaDeakin Genomics Centre, Deakin University, Geelong, VIC, AustraliaCentre for Integrative Ecology, School of Life and Environmental Sciences, Deakin University, Geelong, VIC, AustraliaDeakin Genomics Centre, Deakin University, Geelong, VIC, AustraliaCentre for Sustainable Tropical Fisheries and Aquaculture, James Cook University, Townsville, QLD, AustraliaSouthern Ocean Mariculture, Port Fairy, VIC, AustraliaJade Tiger Abalone, Indented Head, VIC, AustraliaCentre for Integrative Ecology, School of Life and Environmental Sciences, Deakin University, Geelong, VIC, AustraliaDeakin Genomics Centre, Deakin University, Geelong, VIC, Australiahttps://www.frontiersin.org/article/10.3389/fgene.2019.00889/fullabaloneOxford Nanoporehybrid assemblyheterozygosityHaliotisheat shock protein 70
collection	DOAJ
language	English
format	Article
sources	DOAJ
author	Han Ming Gan Han Ming Gan Mun Hua Tan Mun Hua Tan Christopher M. Austin Christopher M. Austin Craig D. H. Sherman Craig D. H. Sherman Yen Ting Wong Yen Ting Wong Jan Strugnell Mark Gervis Luke McPherson Adam D. Miller Adam D. Miller
spellingShingle	Han Ming Gan Han Ming Gan Mun Hua Tan Mun Hua Tan Christopher M. Austin Christopher M. Austin Craig D. H. Sherman Craig D. H. Sherman Yen Ting Wong Yen Ting Wong Jan Strugnell Mark Gervis Luke McPherson Adam D. Miller Adam D. Miller Best Foot Forward: Nanopore Long Reads, Hybrid Meta-Assembly, and Haplotig Purging Optimizes the First Genome Assembly for the Southern Hemisphere Blacklip Abalone (Haliotis rubra) Frontiers in Genetics abalone Oxford Nanopore hybrid assembly heterozygosity Haliotis heat shock protein 70
author_facet	Han Ming Gan Han Ming Gan Mun Hua Tan Mun Hua Tan Christopher M. Austin Christopher M. Austin Craig D. H. Sherman Craig D. H. Sherman Yen Ting Wong Yen Ting Wong Jan Strugnell Mark Gervis Luke McPherson Adam D. Miller Adam D. Miller
author_sort	Han Ming Gan
title	Best Foot Forward: Nanopore Long Reads, Hybrid Meta-Assembly, and Haplotig Purging Optimizes the First Genome Assembly for the Southern Hemisphere Blacklip Abalone (Haliotis rubra)
title_short	Best Foot Forward: Nanopore Long Reads, Hybrid Meta-Assembly, and Haplotig Purging Optimizes the First Genome Assembly for the Southern Hemisphere Blacklip Abalone (Haliotis rubra)
title_full	Best Foot Forward: Nanopore Long Reads, Hybrid Meta-Assembly, and Haplotig Purging Optimizes the First Genome Assembly for the Southern Hemisphere Blacklip Abalone (Haliotis rubra)
title_fullStr	Best Foot Forward: Nanopore Long Reads, Hybrid Meta-Assembly, and Haplotig Purging Optimizes the First Genome Assembly for the Southern Hemisphere Blacklip Abalone (Haliotis rubra)
title_full_unstemmed	Best Foot Forward: Nanopore Long Reads, Hybrid Meta-Assembly, and Haplotig Purging Optimizes the First Genome Assembly for the Southern Hemisphere Blacklip Abalone (Haliotis rubra)
title_sort	best foot forward: nanopore long reads, hybrid meta-assembly, and haplotig purging optimizes the first genome assembly for the southern hemisphere blacklip abalone (haliotis rubra)
publisher	Frontiers Media S.A.
series	Frontiers in Genetics
issn	1664-8021
publishDate	2019-09-01
topic	abalone Oxford Nanopore hybrid assembly heterozygosity Haliotis heat shock protein 70
url	https://www.frontiersin.org/article/10.3389/fgene.2019.00889/full
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Best Foot Forward: Nanopore Long Reads, Hybrid Meta-Assembly, and Haplotig Purging Optimizes the First Genome Assembly for the Southern Hemisphere Blacklip Abalone (Haliotis rubra)

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