Bottom-Up Approaches to Synthetic Cooperation in Microbial Communities

Microbial cooperation pervades ecological scales, from single-species populations to host-associated microbiomes. Understanding the mechanisms promoting the stability of cooperation against potential threats by cheaters is a major question that only recently has been approached experimentally. Synth...

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Main Authors: Daniel Rodríguez Amor, Martina Dal Bello
Format: Article
Language:English
Published: MDPI AG 2019-02-01
Series:Life
Subjects:
Online Access:https://www.mdpi.com/2075-1729/9/1/22
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spelling doaj-c1cbf07613f14501a229fd34e13195f22020-11-25T01:01:12ZengMDPI AGLife2075-17292019-02-01912210.3390/life9010022life9010022Bottom-Up Approaches to Synthetic Cooperation in Microbial CommunitiesDaniel Rodríguez Amor0Martina Dal Bello1Physics of Living Systems, Department of Physics, Massachusetts Institute of Technology, Cambridge, MA 02139, USAPhysics of Living Systems, Department of Physics, Massachusetts Institute of Technology, Cambridge, MA 02139, USAMicrobial cooperation pervades ecological scales, from single-species populations to host-associated microbiomes. Understanding the mechanisms promoting the stability of cooperation against potential threats by cheaters is a major question that only recently has been approached experimentally. Synthetic biology has helped to uncover some of these basic mechanisms, which were to some extent anticipated by theoretical predictions. Moreover, synthetic cooperation is a promising lead towards the engineering of novel functions and enhanced productivity of microbial communities. Here, we review recent progress on engineered cooperation in microbial ecosystems. We focus on bottom-up approaches that help to better understand cooperation at the population level, progressively addressing the challenges of tackling higher degrees of complexity: spatial structure, multispecies communities, and host-associated microbiomes. We envisage cooperation as a key ingredient in engineering complex microbial ecosystems.https://www.mdpi.com/2075-1729/9/1/22synthetic microbial communitiesmutualismcheatershost-microbiome interactionssynthetic ecology
collection DOAJ
language English
format Article
sources DOAJ
author Daniel Rodríguez Amor
Martina Dal Bello
spellingShingle Daniel Rodríguez Amor
Martina Dal Bello
Bottom-Up Approaches to Synthetic Cooperation in Microbial Communities
Life
synthetic microbial communities
mutualism
cheaters
host-microbiome interactions
synthetic ecology
author_facet Daniel Rodríguez Amor
Martina Dal Bello
author_sort Daniel Rodríguez Amor
title Bottom-Up Approaches to Synthetic Cooperation in Microbial Communities
title_short Bottom-Up Approaches to Synthetic Cooperation in Microbial Communities
title_full Bottom-Up Approaches to Synthetic Cooperation in Microbial Communities
title_fullStr Bottom-Up Approaches to Synthetic Cooperation in Microbial Communities
title_full_unstemmed Bottom-Up Approaches to Synthetic Cooperation in Microbial Communities
title_sort bottom-up approaches to synthetic cooperation in microbial communities
publisher MDPI AG
series Life
issn 2075-1729
publishDate 2019-02-01
description Microbial cooperation pervades ecological scales, from single-species populations to host-associated microbiomes. Understanding the mechanisms promoting the stability of cooperation against potential threats by cheaters is a major question that only recently has been approached experimentally. Synthetic biology has helped to uncover some of these basic mechanisms, which were to some extent anticipated by theoretical predictions. Moreover, synthetic cooperation is a promising lead towards the engineering of novel functions and enhanced productivity of microbial communities. Here, we review recent progress on engineered cooperation in microbial ecosystems. We focus on bottom-up approaches that help to better understand cooperation at the population level, progressively addressing the challenges of tackling higher degrees of complexity: spatial structure, multispecies communities, and host-associated microbiomes. We envisage cooperation as a key ingredient in engineering complex microbial ecosystems.
topic synthetic microbial communities
mutualism
cheaters
host-microbiome interactions
synthetic ecology
url https://www.mdpi.com/2075-1729/9/1/22
work_keys_str_mv AT danielrodriguezamor bottomupapproachestosyntheticcooperationinmicrobialcommunities
AT martinadalbello bottomupapproachestosyntheticcooperationinmicrobialcommunities
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