Strategies for optimizing BioNano and Dovetail explored through a second reference quality assembly for the legume model, Medicago truncatula
Abstract Background Third generation sequencing technologies, with sequencing reads in the tens- of kilo-bases, facilitate genome assembly by spanning ambiguous regions and improving continuity. This has been critical for plant genomes, which are difficult to assemble due to high repeat content, gen...
Main Authors: | Karen M. Moll, Peng Zhou, Thiruvarangan Ramaraj, Diego Fajardo, Nicholas P. Devitt, Michael J. Sadowsky, Robert M. Stupar, Peter Tiffin, Jason R. Miller, Nevin D. Young, Kevin A. T. Silverstein, Joann Mudge |
---|---|
Format: | Article |
Language: | English |
Published: |
BMC
2017-08-01
|
Series: | BMC Genomics |
Subjects: | |
Online Access: | http://link.springer.com/article/10.1186/s12864-017-3971-4 |
Similar Items
-
Impact of Arbuscular Mycorrhiza symbiosis on photosynthesis in Medicago truncatula
by: Mettupalli, Dhanunjaya Reddy
Published: (2011) -
BioNanoAnalyst: a visualisation tool to assess genome assembly quality using BioNano data
by: Yuxuan Yuan, et al.
Published: (2017-06-01) -
Gene Expression Profiling of the nip Mutant in Medicago truncatula
by: McKethan, Brandon Lee
Published: (2007) -
Comparative Analysis of the Symbiotic Efficiency of Medicago truncatula and Medicago sativa under Phosphorus Deficiency
by: Lam-Son Phan Tran, et al.
Published: (2013-03-01) -
Medicago PhosphoProtein Database: a repository for Medicago truncatula phosphoprotein data
by: Christopher M. Rose, et al.
Published: (2012-06-01)