SLIM: a flexible web application for the reproducible processing of environmental DNA metabarcoding data

SLIM: a flexible web application for the reproducible processing of environmental DNA metabarcoding data

Abstract Background High-throughput amplicon sequencing of environmental DNA (eDNA metabarcoding) has become a routine tool for biodiversity survey and ecological studies. By including sample-specific tags in the primers prior PCR amplification, it is possible to multiplex hundreds of samples in a s...

Full description

Bibliographic Details
Main Authors: Yoann Dufresne, Franck Lejzerowicz, Laure Apotheloz Perret-Gentil, Jan Pawlowski, Tristan Cordier
Format: Article
Language:English
Published: BMC 2019-02-01
Series:BMC Bioinformatics
Subjects:
eDNA metabarcoding
High-throughput sequencing
Molecular ecology
Pipeline
Reproducibility
Amplicon sequencing
Online Access:http://link.springer.com/article/10.1186/s12859-019-2663-2

Internet

http://link.springer.com/article/10.1186/s12859-019-2663-2

Similar Items