ISHAPE: new rapid and accurate software for haplotyping

ISHAPE: new rapid and accurate software for haplotyping

<p>Abstract</p> <p>Background</p> <p>We have developed a new haplotyping program based on the combination of an iterative multiallelic EM algorithm (IEM), bootstrap resampling and a pseudo Gibbs sampler. The use of the IEM-bootstrap procedure considerably reduces the sp...

Full description

Bibliographic Details
Main Authors:	Nelson George, Boelle Pierre-Yves, Coulonges Cédric, Delaneau Olivier, Spadoni Jean-Louis, Zagury Jean-François
Format:	Article
Language:	English
Published:	BMC 2007-06-01
Series:	BMC Bioinformatics
Online Access:	http://www.biomedcentral.com/1471-2105/8/205

Similar Items

Shape-IT: new rapid and accurate algorithm for haplotype inference
by: Zagury Jean-François, et al.
Published: (2008-12-01)

Computation of haplotypes on SNPs subsets: advantage of the "global method"
by: Do Hervé, et al.
Published: (2006-10-01)

Accurate, scalable and integrative haplotype estimation
by: Olivier Delaneau, et al.
Published: (2019-11-01)

HLA-check: evaluating HLA data from SNP information
by: Marc Jeanmougin, et al.
Published: (2017-07-01)

Identification of Genes Whose Expression Profile Is Associated with Non-Progression towards AIDS Using eQTLs.
by: Jean-Louis Spadoni, et al.
Published: (2015-01-01)

Fast and accurate haplotype frequency estimation for large haplotype vectors from pooled DNA data
by: Iliadis Alexandros, et al.
Published: (2012-10-01)

Dense and accurate whole-chromosome haplotyping of individual genomes
by: David Porubsky, et al.
Published: (2017-11-01)

Analyses bioinformatiques dans le cadre de la génomique du SIDA
by: Coulonges, Cédric
Published: (2011)

Analyses bioinformatiques dans le cadre de la génomique du SIDA
by: Coulonges, Cédric
Published: (2011)

Ranbow: A fast and accurate method for polyploid haplotype reconstruction.
by: M-Hossein Moeinzadeh, et al.
Published: (2020-05-01)

Haplotype threading: accurate polyploid phasing from long reads
by: Sven D. Schrinner, et al.
Published: (2020-09-01)

HaploRec: efficient and accurate large-scale reconstruction of haplotypes
by: Geerts Floris, et al.
Published: (2006-12-01)

Rapid haplotype inference for nuclear families
by: Williams, Amy L., et al.
Published: (2012)

HaploJuice : accurate haplotype assembly from a pool of sequences with known relative concentrations
by: Thomas K. F. Wong, et al.
Published: (2018-10-01)

HaplotypeTools: a toolkit for accurately identifying recombination and recombinant genotypes
by: Farrer, R.A
Published: (2021)

PGA: a software package for rapid, accurate, and flexible batch annotation of plastomes
by: Xiao-Jian Qu, et al.
Published: (2019-05-01)

Hap10: reconstructing accurate and long polyploid haplotypes using linked reads
by: Sina Majidian, et al.
Published: (2020-06-01)

A fast and accurate enumeration-based algorithm for haplotyping a triploid individual
by: Jingli Wu, et al.
Published: (2018-06-01)

A general approach for haplotype phasing across the full spectrum of relatedness.
by: Jared O'Connell, et al.
Published: (2014-04-01)

A rapid conditional enumeration haplotyping method in pedigrees
by: Hoeschele Ina, et al.
Published: (2008-01-01)

A survey of current software for haplotype phase inference
by: Weale Michael E
Published: (2004-01-01)

Haplotag: Software for Haplotype-Based Genotyping-by-Sequencing Analysis
by: Nicholas A. Tinker, et al.
Published: (2016-04-01)

A Random Forests Framework for Modeling Haplotypes as Mosaics of Reference Haplotypes
by: Pierre Faux, et al.
Published: (2019-06-01)

On the use of haplotype phylogeny to detect disease susceptibility loci
by: Darlu Pierre, et al.
Published: (2005-05-01)

Haplotype allelic classes for detecting ongoing positive selection
by: Lefebvre Jean-François, et al.
Published: (2010-01-01)

Some Software’s Used in DNA Sequencing Based Haplotype Analysis
by: Emel Tüten Sevim, et al.
Published: (2019-12-01)

Accurate multiple sequence alignment of transmembrane proteins with PSI-Coffee
by: Chang Jia-Ming, et al.
Published: (2012-03-01)

Epidemiological evidence of higher susceptibility to vCJD in the young
by: Valleron Alain-Jacques, et al.
Published: (2004-08-01)

Generating Accurate Dependencies for Large Software
by: Wang, Pei
Published: (2013)

Accurately Estimate Software Development Cost
by: Pei-lun Huang, et al.
Published: (2007)

Accurate and Efficient KIR Gene and Haplotype Inference From Genome Sequencing Reads With Novel K-mer Signatures
by: David Roe, et al.
Published: (2020-11-01)

Rapid evolution of knockdown resistance haplotypes in response to pyrethroid selection in Aedes aegypti
by: Jennifer Baltzegar, et al.
Published: (2021-08-01)

Mapping Haplotype-haplotype Interactions with Adaptive LASSO
by: Li Ming, et al.
Published: (2010-08-01)

Factors Affecting the Power of Haplotype Markers in Association Studies
by: Martha T. Hamblin, et al.
Published: (2011-07-01)

hapassoc: Software for Likelihood Inference of Trait Associations with SNP Haplotypes and Other Attributes
by: Kelly Burkett, et al.
Published: (2006-04-01)

A comprehensive literature review of haplotyping software and methods for use with unrelated individuals
by: Salem Rany M, et al.
Published: (2005-03-01)

hapassoc: Software for Likelihood Inference of Trait Associations with SNP Haplotypes and Other Attributes
by: Kelly Burkett, et al.
Published: (2006-04-01)

Accurate and rapid estimation of phosphene thresholds (REPT).
by: Arman Abrahamyan, et al.
Published: (2011-01-01)

Rapid and accurate pyrosequencing of angiosperm plastid genomes
by: Farmerie William G, et al.
Published: (2006-08-01)

Rapid and accurate modelling of engine manufacturing systems
by: Aitchison, K. J.
Published: (1995)