Analysis and Research of Key Genes in Gene Expression Network Based on Complex Network

Gene expression network is also a type of complex network. It is challenging to analyze the gene expression network through relevant knowledge and algorithms of a complex network. In this paper, the existing characteristics of genes are analyzed from various indexes of the gene expression network to...

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Main Authors: Guobin Chen, Jun Qi, Chao Tang, Ying Wang, Yongzhong Wu, Xiaolong Shi
Format: Article
Language:English
Published: Hindawi-Wiley 2020-01-01
Series:Complexity
Online Access:http://dx.doi.org/10.1155/2020/8816633
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spelling doaj-cc1bcf6769ec4407886322a19707805a2020-12-21T11:41:27ZengHindawi-WileyComplexity1076-27871099-05262020-01-01202010.1155/2020/88166338816633Analysis and Research of Key Genes in Gene Expression Network Based on Complex NetworkGuobin Chen0Jun Qi1Chao Tang2Ying Wang3Yongzhong Wu4Xiaolong Shi5Chongqing Key Laboratory of Spatial Data Mining and Big Data Integration for Ecology and Environment, Rongzhi College of Chongqing Technology and Business University, Chongqing 401320, ChinaRadiation & Cancer Biology Laboratory, Chongqing University Cancer Hospital & Chongqing Cancer Institute & Chongqing Cancer Hospital, Chongqing 400030, ChinaRadiation & Cancer Biology Laboratory, Chongqing University Cancer Hospital & Chongqing Cancer Institute & Chongqing Cancer Hospital, Chongqing 400030, ChinaRadiation & Cancer Biology Laboratory, Chongqing University Cancer Hospital & Chongqing Cancer Institute & Chongqing Cancer Hospital, Chongqing 400030, ChinaRadiation & Cancer Biology Laboratory, Chongqing University Cancer Hospital & Chongqing Cancer Institute & Chongqing Cancer Hospital, Chongqing 400030, ChinaRadiation & Cancer Biology Laboratory, Chongqing University Cancer Hospital & Chongqing Cancer Institute & Chongqing Cancer Hospital, Chongqing 400030, ChinaGene expression network is also a type of complex network. It is challenging to analyze the gene expression network through relevant knowledge and algorithms of a complex network. In this paper, the existing characteristics of genes are analyzed from various indexes of the gene expression network to analyze key genes and TOP genes. Firstly, gene chip data are screened, gene data with obvious characteristics are selected, and relevant clustering characteristics are analyzed. Then, the complex gene network structure is established, and gene networks with different threshold shapes and different sizes are selected. Finally, the relevant indexes and PR values after the PageRank algorithm are analyzed for complex networks under different thresholds, thus establishing the TOP gene and PR sequence.http://dx.doi.org/10.1155/2020/8816633
collection DOAJ
language English
format Article
sources DOAJ
author Guobin Chen
Jun Qi
Chao Tang
Ying Wang
Yongzhong Wu
Xiaolong Shi
spellingShingle Guobin Chen
Jun Qi
Chao Tang
Ying Wang
Yongzhong Wu
Xiaolong Shi
Analysis and Research of Key Genes in Gene Expression Network Based on Complex Network
Complexity
author_facet Guobin Chen
Jun Qi
Chao Tang
Ying Wang
Yongzhong Wu
Xiaolong Shi
author_sort Guobin Chen
title Analysis and Research of Key Genes in Gene Expression Network Based on Complex Network
title_short Analysis and Research of Key Genes in Gene Expression Network Based on Complex Network
title_full Analysis and Research of Key Genes in Gene Expression Network Based on Complex Network
title_fullStr Analysis and Research of Key Genes in Gene Expression Network Based on Complex Network
title_full_unstemmed Analysis and Research of Key Genes in Gene Expression Network Based on Complex Network
title_sort analysis and research of key genes in gene expression network based on complex network
publisher Hindawi-Wiley
series Complexity
issn 1076-2787
1099-0526
publishDate 2020-01-01
description Gene expression network is also a type of complex network. It is challenging to analyze the gene expression network through relevant knowledge and algorithms of a complex network. In this paper, the existing characteristics of genes are analyzed from various indexes of the gene expression network to analyze key genes and TOP genes. Firstly, gene chip data are screened, gene data with obvious characteristics are selected, and relevant clustering characteristics are analyzed. Then, the complex gene network structure is established, and gene networks with different threshold shapes and different sizes are selected. Finally, the relevant indexes and PR values after the PageRank algorithm are analyzed for complex networks under different thresholds, thus establishing the TOP gene and PR sequence.
url http://dx.doi.org/10.1155/2020/8816633
work_keys_str_mv AT guobinchen analysisandresearchofkeygenesingeneexpressionnetworkbasedoncomplexnetwork
AT junqi analysisandresearchofkeygenesingeneexpressionnetworkbasedoncomplexnetwork
AT chaotang analysisandresearchofkeygenesingeneexpressionnetworkbasedoncomplexnetwork
AT yingwang analysisandresearchofkeygenesingeneexpressionnetworkbasedoncomplexnetwork
AT yongzhongwu analysisandresearchofkeygenesingeneexpressionnetworkbasedoncomplexnetwork
AT xiaolongshi analysisandresearchofkeygenesingeneexpressionnetworkbasedoncomplexnetwork
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