The Endometrial Transcription Landscape of MRKH Syndrome

The Mayer-Rokitansky-Küster-Hauser (MRKH) syndrome (OMIM 277000) is characterized by agenesis of the uterus and upper part of the vagina in females with normal ovarian function. While genetic causes have been identified for a small subset of patients and epigenetic mechanisms presumably contribute t...

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Main Authors: Thomas Hentrich, André Koch, Nico Weber, Alexander Kilzheimer, Ana Maia, Simone Burkhardt, Katharina Rall, Nicolas Casadei, Oliver Kohlbacher, Olaf Riess, Julia Maria Schulze-Hentrich, Sara Yvonne Brucker
Format: Article
Language:English
Published: Frontiers Media S.A. 2020-09-01
Series:Frontiers in Cell and Developmental Biology
Subjects:
Online Access:https://www.frontiersin.org/article/10.3389/fcell.2020.572281/full
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spelling doaj-d0ce1aba93694d509b8213dc8c2303542020-11-25T02:54:53ZengFrontiers Media S.A.Frontiers in Cell and Developmental Biology2296-634X2020-09-01810.3389/fcell.2020.572281572281The Endometrial Transcription Landscape of MRKH SyndromeThomas Hentrich0André Koch1Nico Weber2Nico Weber3Alexander Kilzheimer4Ana Maia5Simone Burkhardt6Katharina Rall7Katharina Rall8Nicolas Casadei9Nicolas Casadei10Oliver Kohlbacher11Oliver Kohlbacher12Oliver Kohlbacher13Oliver Kohlbacher14Olaf Riess15Olaf Riess16Julia Maria Schulze-Hentrich17Sara Yvonne Brucker18Sara Yvonne Brucker19Institute of Medical Genetics and Applied Genomics, University of Tübingen, Tübingen, GermanyDepartment of Obstetrics and Gynecology, University of Tübingen, Tübingen, GermanyApplied Bioinformatics, Department of Computer Science, University of Tübingen, Tübingen, GermanyInstitute for Bioinformatics and Medical Informatics, University of Tübingen, Tübingen, GermanyInstitute of Medical Genetics and Applied Genomics, University of Tübingen, Tübingen, GermanyDivision of Molecular Genome Analysis, German Cancer Research Center (DKFZ), Heidelberg, GermanyInstitute of Medical Genetics and Applied Genomics, University of Tübingen, Tübingen, GermanyDepartment of Obstetrics and Gynecology, University of Tübingen, Tübingen, GermanyCentre for Rare Diseases, University of Tübingen, Tübingen, GermanyInstitute of Medical Genetics and Applied Genomics, University of Tübingen, Tübingen, GermanyNGS Competence Center Tübingen (NCCT), Tübingen, GermanyApplied Bioinformatics, Department of Computer Science, University of Tübingen, Tübingen, GermanyInstitute for Bioinformatics and Medical Informatics, University of Tübingen, Tübingen, GermanyInstitute for Translational Bioinformatics, University Hospital Tübingen, Tübingen, GermanyBiomolecular Interactions, Max Planck Institute for Developmental Biology, Tübingen, GermanyInstitute of Medical Genetics and Applied Genomics, University of Tübingen, Tübingen, GermanyNGS Competence Center Tübingen (NCCT), Tübingen, GermanyInstitute of Medical Genetics and Applied Genomics, University of Tübingen, Tübingen, GermanyDepartment of Obstetrics and Gynecology, University of Tübingen, Tübingen, GermanyNGS Competence Center Tübingen (NCCT), Tübingen, GermanyThe Mayer-Rokitansky-Küster-Hauser (MRKH) syndrome (OMIM 277000) is characterized by agenesis of the uterus and upper part of the vagina in females with normal ovarian function. While genetic causes have been identified for a small subset of patients and epigenetic mechanisms presumably contribute to the pathogenic unfolding, too, the etiology of the syndrome has remained largely enigmatic. A comprehensive understanding of gene activity in the context of the disease is crucial to identify etiological components and their potential interplay. So far, this understanding is lacking, primarily due to the scarcity of samples and suitable tissue. In order to close this gap, we profiled endometrial tissue of uterus rudiments in a large cohort of MRKH patients using RNA-seq and thereby provide a genome-wide view on the altered transcription landscape of the MRKH syndrome. Differential and co-expression analyses of the data identified cellular processes and candidate genes that converge on a core network of interconnected regulators that emerge as pivotal for the perturbed expression space. With these results and browsable access to the rich data through an online tool we seek to accelerate research to unravel the underlying biology of the syndrome.https://www.frontiersin.org/article/10.3389/fcell.2020.572281/fullendometriumuterusMRKHrare diseasetranscriptome
collection DOAJ
language English
format Article
sources DOAJ
author Thomas Hentrich
André Koch
Nico Weber
Nico Weber
Alexander Kilzheimer
Ana Maia
Simone Burkhardt
Katharina Rall
Katharina Rall
Nicolas Casadei
Nicolas Casadei
Oliver Kohlbacher
Oliver Kohlbacher
Oliver Kohlbacher
Oliver Kohlbacher
Olaf Riess
Olaf Riess
Julia Maria Schulze-Hentrich
Sara Yvonne Brucker
Sara Yvonne Brucker
spellingShingle Thomas Hentrich
André Koch
Nico Weber
Nico Weber
Alexander Kilzheimer
Ana Maia
Simone Burkhardt
Katharina Rall
Katharina Rall
Nicolas Casadei
Nicolas Casadei
Oliver Kohlbacher
Oliver Kohlbacher
Oliver Kohlbacher
Oliver Kohlbacher
Olaf Riess
Olaf Riess
Julia Maria Schulze-Hentrich
Sara Yvonne Brucker
Sara Yvonne Brucker
The Endometrial Transcription Landscape of MRKH Syndrome
Frontiers in Cell and Developmental Biology
endometrium
uterus
MRKH
rare disease
transcriptome
author_facet Thomas Hentrich
André Koch
Nico Weber
Nico Weber
Alexander Kilzheimer
Ana Maia
Simone Burkhardt
Katharina Rall
Katharina Rall
Nicolas Casadei
Nicolas Casadei
Oliver Kohlbacher
Oliver Kohlbacher
Oliver Kohlbacher
Oliver Kohlbacher
Olaf Riess
Olaf Riess
Julia Maria Schulze-Hentrich
Sara Yvonne Brucker
Sara Yvonne Brucker
author_sort Thomas Hentrich
title The Endometrial Transcription Landscape of MRKH Syndrome
title_short The Endometrial Transcription Landscape of MRKH Syndrome
title_full The Endometrial Transcription Landscape of MRKH Syndrome
title_fullStr The Endometrial Transcription Landscape of MRKH Syndrome
title_full_unstemmed The Endometrial Transcription Landscape of MRKH Syndrome
title_sort endometrial transcription landscape of mrkh syndrome
publisher Frontiers Media S.A.
series Frontiers in Cell and Developmental Biology
issn 2296-634X
publishDate 2020-09-01
description The Mayer-Rokitansky-Küster-Hauser (MRKH) syndrome (OMIM 277000) is characterized by agenesis of the uterus and upper part of the vagina in females with normal ovarian function. While genetic causes have been identified for a small subset of patients and epigenetic mechanisms presumably contribute to the pathogenic unfolding, too, the etiology of the syndrome has remained largely enigmatic. A comprehensive understanding of gene activity in the context of the disease is crucial to identify etiological components and their potential interplay. So far, this understanding is lacking, primarily due to the scarcity of samples and suitable tissue. In order to close this gap, we profiled endometrial tissue of uterus rudiments in a large cohort of MRKH patients using RNA-seq and thereby provide a genome-wide view on the altered transcription landscape of the MRKH syndrome. Differential and co-expression analyses of the data identified cellular processes and candidate genes that converge on a core network of interconnected regulators that emerge as pivotal for the perturbed expression space. With these results and browsable access to the rich data through an online tool we seek to accelerate research to unravel the underlying biology of the syndrome.
topic endometrium
uterus
MRKH
rare disease
transcriptome
url https://www.frontiersin.org/article/10.3389/fcell.2020.572281/full
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