The Endometrial Transcription Landscape of MRKH Syndrome
The Mayer-Rokitansky-Küster-Hauser (MRKH) syndrome (OMIM 277000) is characterized by agenesis of the uterus and upper part of the vagina in females with normal ovarian function. While genetic causes have been identified for a small subset of patients and epigenetic mechanisms presumably contribute t...
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doaj-d0ce1aba93694d509b8213dc8c2303542020-11-25T02:54:53ZengFrontiers Media S.A.Frontiers in Cell and Developmental Biology2296-634X2020-09-01810.3389/fcell.2020.572281572281The Endometrial Transcription Landscape of MRKH SyndromeThomas Hentrich0André Koch1Nico Weber2Nico Weber3Alexander Kilzheimer4Ana Maia5Simone Burkhardt6Katharina Rall7Katharina Rall8Nicolas Casadei9Nicolas Casadei10Oliver Kohlbacher11Oliver Kohlbacher12Oliver Kohlbacher13Oliver Kohlbacher14Olaf Riess15Olaf Riess16Julia Maria Schulze-Hentrich17Sara Yvonne Brucker18Sara Yvonne Brucker19Institute of Medical Genetics and Applied Genomics, University of Tübingen, Tübingen, GermanyDepartment of Obstetrics and Gynecology, University of Tübingen, Tübingen, GermanyApplied Bioinformatics, Department of Computer Science, University of Tübingen, Tübingen, GermanyInstitute for Bioinformatics and Medical Informatics, University of Tübingen, Tübingen, GermanyInstitute of Medical Genetics and Applied Genomics, University of Tübingen, Tübingen, GermanyDivision of Molecular Genome Analysis, German Cancer Research Center (DKFZ), Heidelberg, GermanyInstitute of Medical Genetics and Applied Genomics, University of Tübingen, Tübingen, GermanyDepartment of Obstetrics and Gynecology, University of Tübingen, Tübingen, GermanyCentre for Rare Diseases, University of Tübingen, Tübingen, GermanyInstitute of Medical Genetics and Applied Genomics, University of Tübingen, Tübingen, GermanyNGS Competence Center Tübingen (NCCT), Tübingen, GermanyApplied Bioinformatics, Department of Computer Science, University of Tübingen, Tübingen, GermanyInstitute for Bioinformatics and Medical Informatics, University of Tübingen, Tübingen, GermanyInstitute for Translational Bioinformatics, University Hospital Tübingen, Tübingen, GermanyBiomolecular Interactions, Max Planck Institute for Developmental Biology, Tübingen, GermanyInstitute of Medical Genetics and Applied Genomics, University of Tübingen, Tübingen, GermanyNGS Competence Center Tübingen (NCCT), Tübingen, GermanyInstitute of Medical Genetics and Applied Genomics, University of Tübingen, Tübingen, GermanyDepartment of Obstetrics and Gynecology, University of Tübingen, Tübingen, GermanyNGS Competence Center Tübingen (NCCT), Tübingen, GermanyThe Mayer-Rokitansky-Küster-Hauser (MRKH) syndrome (OMIM 277000) is characterized by agenesis of the uterus and upper part of the vagina in females with normal ovarian function. While genetic causes have been identified for a small subset of patients and epigenetic mechanisms presumably contribute to the pathogenic unfolding, too, the etiology of the syndrome has remained largely enigmatic. A comprehensive understanding of gene activity in the context of the disease is crucial to identify etiological components and their potential interplay. So far, this understanding is lacking, primarily due to the scarcity of samples and suitable tissue. In order to close this gap, we profiled endometrial tissue of uterus rudiments in a large cohort of MRKH patients using RNA-seq and thereby provide a genome-wide view on the altered transcription landscape of the MRKH syndrome. Differential and co-expression analyses of the data identified cellular processes and candidate genes that converge on a core network of interconnected regulators that emerge as pivotal for the perturbed expression space. With these results and browsable access to the rich data through an online tool we seek to accelerate research to unravel the underlying biology of the syndrome.https://www.frontiersin.org/article/10.3389/fcell.2020.572281/fullendometriumuterusMRKHrare diseasetranscriptome |
collection |
DOAJ |
language |
English |
format |
Article |
sources |
DOAJ |
author |
Thomas Hentrich André Koch Nico Weber Nico Weber Alexander Kilzheimer Ana Maia Simone Burkhardt Katharina Rall Katharina Rall Nicolas Casadei Nicolas Casadei Oliver Kohlbacher Oliver Kohlbacher Oliver Kohlbacher Oliver Kohlbacher Olaf Riess Olaf Riess Julia Maria Schulze-Hentrich Sara Yvonne Brucker Sara Yvonne Brucker |
spellingShingle |
Thomas Hentrich André Koch Nico Weber Nico Weber Alexander Kilzheimer Ana Maia Simone Burkhardt Katharina Rall Katharina Rall Nicolas Casadei Nicolas Casadei Oliver Kohlbacher Oliver Kohlbacher Oliver Kohlbacher Oliver Kohlbacher Olaf Riess Olaf Riess Julia Maria Schulze-Hentrich Sara Yvonne Brucker Sara Yvonne Brucker The Endometrial Transcription Landscape of MRKH Syndrome Frontiers in Cell and Developmental Biology endometrium uterus MRKH rare disease transcriptome |
author_facet |
Thomas Hentrich André Koch Nico Weber Nico Weber Alexander Kilzheimer Ana Maia Simone Burkhardt Katharina Rall Katharina Rall Nicolas Casadei Nicolas Casadei Oliver Kohlbacher Oliver Kohlbacher Oliver Kohlbacher Oliver Kohlbacher Olaf Riess Olaf Riess Julia Maria Schulze-Hentrich Sara Yvonne Brucker Sara Yvonne Brucker |
author_sort |
Thomas Hentrich |
title |
The Endometrial Transcription Landscape of MRKH Syndrome |
title_short |
The Endometrial Transcription Landscape of MRKH Syndrome |
title_full |
The Endometrial Transcription Landscape of MRKH Syndrome |
title_fullStr |
The Endometrial Transcription Landscape of MRKH Syndrome |
title_full_unstemmed |
The Endometrial Transcription Landscape of MRKH Syndrome |
title_sort |
endometrial transcription landscape of mrkh syndrome |
publisher |
Frontiers Media S.A. |
series |
Frontiers in Cell and Developmental Biology |
issn |
2296-634X |
publishDate |
2020-09-01 |
description |
The Mayer-Rokitansky-Küster-Hauser (MRKH) syndrome (OMIM 277000) is characterized by agenesis of the uterus and upper part of the vagina in females with normal ovarian function. While genetic causes have been identified for a small subset of patients and epigenetic mechanisms presumably contribute to the pathogenic unfolding, too, the etiology of the syndrome has remained largely enigmatic. A comprehensive understanding of gene activity in the context of the disease is crucial to identify etiological components and their potential interplay. So far, this understanding is lacking, primarily due to the scarcity of samples and suitable tissue. In order to close this gap, we profiled endometrial tissue of uterus rudiments in a large cohort of MRKH patients using RNA-seq and thereby provide a genome-wide view on the altered transcription landscape of the MRKH syndrome. Differential and co-expression analyses of the data identified cellular processes and candidate genes that converge on a core network of interconnected regulators that emerge as pivotal for the perturbed expression space. With these results and browsable access to the rich data through an online tool we seek to accelerate research to unravel the underlying biology of the syndrome. |
topic |
endometrium uterus MRKH rare disease transcriptome |
url |
https://www.frontiersin.org/article/10.3389/fcell.2020.572281/full |
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