A Methodology to Generate Longitudinally Updated Acute‐On‐Chronic Liver Failure Prognostication Scores From Electronic Health Record Data

Queries of electronic health record (EHR) data repositories allow for automated data collection. These techniques have not been used in hepatology due to the inability to capture hepatic encephalopathy (HE) grades, which are inputs for acute‐on‐chronic liver failure (ACLF) models. Here, we describe...

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Main Authors: Jin Ge, Nader Najafi, Wendi Zhao, Ma Somsouk, Margaret Fang, Jennifer C. Lai
Format: Article
Language:English
Published: Wiley 2021-06-01
Series:Hepatology Communications
Online Access:https://doi.org/10.1002/hep4.1690
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spelling doaj-d2dc1b67e3f94ed28b314e972b36c9502021-06-07T12:53:12ZengWileyHepatology Communications2471-254X2021-06-01561069108010.1002/hep4.1690A Methodology to Generate Longitudinally Updated Acute‐On‐Chronic Liver Failure Prognostication Scores From Electronic Health Record DataJin Ge0Nader Najafi1Wendi Zhao2Ma Somsouk3Margaret Fang4Jennifer C. Lai5Division of Gastroenterology and Hepatology Department of Medicine University of California San Francisco San Francisco CA USADivision of Hospital Medicine Department of Medicine University of California San Francisco San Francisco CA USADivision of Hospital Medicine Department of Medicine University of California San Francisco San Francisco CA USADivision of Gastroenterology and Hepatology Department of Medicine University of California San Francisco San Francisco CA USADivision of Hospital Medicine Department of Medicine University of California San Francisco San Francisco CA USADivision of Gastroenterology and Hepatology Department of Medicine University of California San Francisco San Francisco CA USAQueries of electronic health record (EHR) data repositories allow for automated data collection. These techniques have not been used in hepatology due to the inability to capture hepatic encephalopathy (HE) grades, which are inputs for acute‐on‐chronic liver failure (ACLF) models. Here, we describe a methodology to use EHR data to calculate rolling ACLF scores. We examined 239 patient admissions with end‐stage liver disease from July 2014 to June 2019. We mapped EHR flowsheet data to determine HE grades and calculated two longitudinally updated ACLF scores. We validated HE grades and ACLF diagnoses by chart review and calculated sensitivity, specificity, and Cohen’s kappa. Of 239 patient admissions analyzed, 37% were women, 46% were non‐Hispanic white, median age was 60 years, and the median Model for End‐Stage Liver Disease–Na score at admission was 25. Of the 239, 7% were diagnosed with ACLF as defined by the North American Consortium for the Study of End‐Stage Liver Disease (NACSELD) diagnostic criteria at admission, 27% during the hospitalization, and 9% at discharge. Forty percent were diagnosed with ACLF by the European Association for the Study of the Liver– Chronic Liver Failure Consortium (CLIF‐C) diagnostic criteria at admission, 51% during the hospitalization, and 34% at discharge. From the chart review of 51 admissions, we found sensitivities and specificities for any HE (grades 1‐4) were 92%‐97% and 76%‐95%, respectively; for severe HE (grades 3‐4), sensitivities and specificities were 100% and 78%‐98%, respectively. Cohen’s kappa between flowsheet and chart review of HE grades ranged from 0.55 to 0.72. Sensitivities and specificities for NACSELD‐ACLF diagnoses were 75%‐100% and 96%‐100%, respectively; for CLIF‐C‐ACLF diagnoses, these were 91%‐100% and 96‐100%, respectively. We generated approximately 28 unique ACLF scores per patient per admission day. Conclusion: We developed an informatics‐based methodology to calculate longitudinally updated ACLF scores. This opens new analytic potentials, such as big data methods, to develop electronic phenotypes for patients with ACLF.https://doi.org/10.1002/hep4.1690
collection DOAJ
language English
format Article
sources DOAJ
author Jin Ge
Nader Najafi
Wendi Zhao
Ma Somsouk
Margaret Fang
Jennifer C. Lai
spellingShingle Jin Ge
Nader Najafi
Wendi Zhao
Ma Somsouk
Margaret Fang
Jennifer C. Lai
A Methodology to Generate Longitudinally Updated Acute‐On‐Chronic Liver Failure Prognostication Scores From Electronic Health Record Data
Hepatology Communications
author_facet Jin Ge
Nader Najafi
Wendi Zhao
Ma Somsouk
Margaret Fang
Jennifer C. Lai
author_sort Jin Ge
title A Methodology to Generate Longitudinally Updated Acute‐On‐Chronic Liver Failure Prognostication Scores From Electronic Health Record Data
title_short A Methodology to Generate Longitudinally Updated Acute‐On‐Chronic Liver Failure Prognostication Scores From Electronic Health Record Data
title_full A Methodology to Generate Longitudinally Updated Acute‐On‐Chronic Liver Failure Prognostication Scores From Electronic Health Record Data
title_fullStr A Methodology to Generate Longitudinally Updated Acute‐On‐Chronic Liver Failure Prognostication Scores From Electronic Health Record Data
title_full_unstemmed A Methodology to Generate Longitudinally Updated Acute‐On‐Chronic Liver Failure Prognostication Scores From Electronic Health Record Data
title_sort methodology to generate longitudinally updated acute‐on‐chronic liver failure prognostication scores from electronic health record data
publisher Wiley
series Hepatology Communications
issn 2471-254X
publishDate 2021-06-01
description Queries of electronic health record (EHR) data repositories allow for automated data collection. These techniques have not been used in hepatology due to the inability to capture hepatic encephalopathy (HE) grades, which are inputs for acute‐on‐chronic liver failure (ACLF) models. Here, we describe a methodology to use EHR data to calculate rolling ACLF scores. We examined 239 patient admissions with end‐stage liver disease from July 2014 to June 2019. We mapped EHR flowsheet data to determine HE grades and calculated two longitudinally updated ACLF scores. We validated HE grades and ACLF diagnoses by chart review and calculated sensitivity, specificity, and Cohen’s kappa. Of 239 patient admissions analyzed, 37% were women, 46% were non‐Hispanic white, median age was 60 years, and the median Model for End‐Stage Liver Disease–Na score at admission was 25. Of the 239, 7% were diagnosed with ACLF as defined by the North American Consortium for the Study of End‐Stage Liver Disease (NACSELD) diagnostic criteria at admission, 27% during the hospitalization, and 9% at discharge. Forty percent were diagnosed with ACLF by the European Association for the Study of the Liver– Chronic Liver Failure Consortium (CLIF‐C) diagnostic criteria at admission, 51% during the hospitalization, and 34% at discharge. From the chart review of 51 admissions, we found sensitivities and specificities for any HE (grades 1‐4) were 92%‐97% and 76%‐95%, respectively; for severe HE (grades 3‐4), sensitivities and specificities were 100% and 78%‐98%, respectively. Cohen’s kappa between flowsheet and chart review of HE grades ranged from 0.55 to 0.72. Sensitivities and specificities for NACSELD‐ACLF diagnoses were 75%‐100% and 96%‐100%, respectively; for CLIF‐C‐ACLF diagnoses, these were 91%‐100% and 96‐100%, respectively. We generated approximately 28 unique ACLF scores per patient per admission day. Conclusion: We developed an informatics‐based methodology to calculate longitudinally updated ACLF scores. This opens new analytic potentials, such as big data methods, to develop electronic phenotypes for patients with ACLF.
url https://doi.org/10.1002/hep4.1690
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