Carnelian uncovers hidden functional patterns across diverse study populations from whole metagenome sequencing reads

Carnelian uncovers hidden functional patterns across diverse study populations from whole metagenome sequencing reads

Abstract Microbial populations exhibit functional changes in response to different ambient environments. Although whole metagenome sequencing promises enough raw data to study those changes, existing tools are limited in their ability to directly compare microbial metabolic function across samples a...

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Bibliographic Details
Main Authors: Sumaiya Nazeen, Yun William Yu, Bonnie Berger
Format: Article
Language:English
Published: BMC 2020-02-01
Series:Genome Biology
Subjects:
Comparative functional metagenomics
Functional profiling
Metagenomic binning
Alignment-free binning
Compositional gapped binning
Online Access:http://link.springer.com/article/10.1186/s13059-020-1933-7

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http://link.springer.com/article/10.1186/s13059-020-1933-7

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