Automatic Segmentation of Multiple Structures in Knee Arthroscopy Using Deep Learning

Minimally invasive surgery (MIS) is among the preferred procedures for treating a number of ailments as patients benefit from fast recovery and reduced blood loss. The trade-off is that surgeons lose direct visual contact with the surgical site and have limited intra-operative imaging techniques for...

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Main Authors: Yaqub Jonmohamadi, Yu Takeda, Fengbei Liu, Fumio Sasazawa, Gabriel Maicas, Ross Crawford, Jonathan Roberts, Ajay K. Pandey, Gustavo Carneiro
Format: Article
Language:English
Published: IEEE 2020-01-01
Series:IEEE Access
Subjects:
Online Access:https://ieeexplore.ieee.org/document/9032130/
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spelling doaj-db2933994d55475c920a1313d13b3c432021-03-30T02:12:24ZengIEEEIEEE Access2169-35362020-01-018518535186110.1109/ACCESS.2020.29800259032130Automatic Segmentation of Multiple Structures in Knee Arthroscopy Using Deep LearningYaqub Jonmohamadi0https://orcid.org/0000-0002-2912-0554Yu Takeda1Fengbei Liu2Fumio Sasazawa3Gabriel Maicas4Ross Crawford5Jonathan Roberts6Ajay K. Pandey7Gustavo Carneiro8School of Electrical Engineering and Robotics, Science and Engineering Faculty, Queensland University of Technology, Brisbane, QLD, AustraliaDepartment of Orthopaedic Surgery, Hyogo College of Medicine, Nishinomiya, JapanSchool of Computer Science, Australian Institute for Machine Learning, The University of Adelaide, Adelaide, SA, AustraliaFaculty of Medicine and Graduate School of Medicine, Hokkaido University, Sapporo, JapanSchool of Computer Science, Australian Institute for Machine Learning, The University of Adelaide, Adelaide, SA, AustraliaInstitute of Health and Biomedical Innovation, Queensland University of Technology, Brisbane, QLD, AustraliaSchool of Electrical Engineering and Robotics, Science and Engineering Faculty, Queensland University of Technology, Brisbane, QLD, AustraliaSchool of Electrical Engineering and Robotics, Science and Engineering Faculty, Queensland University of Technology, Brisbane, QLD, AustraliaSchool of Computer Science, Australian Institute for Machine Learning, The University of Adelaide, Adelaide, SA, AustraliaMinimally invasive surgery (MIS) is among the preferred procedures for treating a number of ailments as patients benefit from fast recovery and reduced blood loss. The trade-off is that surgeons lose direct visual contact with the surgical site and have limited intra-operative imaging techniques for real-time feedback. Computer vision methods as well as segmentation and tracking of the tissues and tools in the video frames, are increasingly being adopted to MIS to alleviate such limitations. So far, most of the advances in MIS have been focused on laparoscopic applications, with scarce literature on knee arthroscopy. Here for the first time, we propose a new method for the automatic segmentation of multiple tissue structures for knee arthroscopy. The training data of 3868 images were collected from 4 cadaver experiments, 5 knees, and manually contoured by two clinicians into four classes: Femur, Anterior Cruciate Ligament (ACL), Tibia, and Meniscus. Our approach adapts the U-net and the U-net++ architectures for this segmentation task. Using the cross-validation experiment, the mean Dice similarity coefficients for Femur, Tibia, ACL, and Meniscus are 0.78, 0.50, 0.41, 0.43 using the U-net and 0.79, 0.50, 0.51, 0.48 using the U-net++. While the reported segmentation method is of great applicability in terms of contextual awareness for the surgical team, it can also be used for medical robotic applications such as SLAM and depth mapping.https://ieeexplore.ieee.org/document/9032130/Arthroscopyartificial intelligenceauto segmentationdeep learningendoscopysurgery
collection DOAJ
language English
format Article
sources DOAJ
author Yaqub Jonmohamadi
Yu Takeda
Fengbei Liu
Fumio Sasazawa
Gabriel Maicas
Ross Crawford
Jonathan Roberts
Ajay K. Pandey
Gustavo Carneiro
spellingShingle Yaqub Jonmohamadi
Yu Takeda
Fengbei Liu
Fumio Sasazawa
Gabriel Maicas
Ross Crawford
Jonathan Roberts
Ajay K. Pandey
Gustavo Carneiro
Automatic Segmentation of Multiple Structures in Knee Arthroscopy Using Deep Learning
IEEE Access
Arthroscopy
artificial intelligence
auto segmentation
deep learning
endoscopy
surgery
author_facet Yaqub Jonmohamadi
Yu Takeda
Fengbei Liu
Fumio Sasazawa
Gabriel Maicas
Ross Crawford
Jonathan Roberts
Ajay K. Pandey
Gustavo Carneiro
author_sort Yaqub Jonmohamadi
title Automatic Segmentation of Multiple Structures in Knee Arthroscopy Using Deep Learning
title_short Automatic Segmentation of Multiple Structures in Knee Arthroscopy Using Deep Learning
title_full Automatic Segmentation of Multiple Structures in Knee Arthroscopy Using Deep Learning
title_fullStr Automatic Segmentation of Multiple Structures in Knee Arthroscopy Using Deep Learning
title_full_unstemmed Automatic Segmentation of Multiple Structures in Knee Arthroscopy Using Deep Learning
title_sort automatic segmentation of multiple structures in knee arthroscopy using deep learning
publisher IEEE
series IEEE Access
issn 2169-3536
publishDate 2020-01-01
description Minimally invasive surgery (MIS) is among the preferred procedures for treating a number of ailments as patients benefit from fast recovery and reduced blood loss. The trade-off is that surgeons lose direct visual contact with the surgical site and have limited intra-operative imaging techniques for real-time feedback. Computer vision methods as well as segmentation and tracking of the tissues and tools in the video frames, are increasingly being adopted to MIS to alleviate such limitations. So far, most of the advances in MIS have been focused on laparoscopic applications, with scarce literature on knee arthroscopy. Here for the first time, we propose a new method for the automatic segmentation of multiple tissue structures for knee arthroscopy. The training data of 3868 images were collected from 4 cadaver experiments, 5 knees, and manually contoured by two clinicians into four classes: Femur, Anterior Cruciate Ligament (ACL), Tibia, and Meniscus. Our approach adapts the U-net and the U-net++ architectures for this segmentation task. Using the cross-validation experiment, the mean Dice similarity coefficients for Femur, Tibia, ACL, and Meniscus are 0.78, 0.50, 0.41, 0.43 using the U-net and 0.79, 0.50, 0.51, 0.48 using the U-net++. While the reported segmentation method is of great applicability in terms of contextual awareness for the surgical team, it can also be used for medical robotic applications such as SLAM and depth mapping.
topic Arthroscopy
artificial intelligence
auto segmentation
deep learning
endoscopy
surgery
url https://ieeexplore.ieee.org/document/9032130/
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