haploR: an R package for querying web-based annotation tools [version 2; referees: 2 approved, 1 approved with reservations]

haploR: an R package for querying web-based annotation tools [version 2; referees: 2 approved, 1 approved with reservations]

We developed haploR, an R package for querying web based genome annotation tools HaploReg and RegulomeDB. haploR gathers information in a data frame which is suitable for downstream bioinformatic analyses. This will facilitate post-genome wide association studies streamline analysis for rapid discov...

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Main Authors: Ilya Y. Zhbannikov, Konstantin Arbeev, Svetlana Ukraintseva, Anatoliy I. Yashin
Format: Article
Language:English
Published: F1000 Research Ltd 2017-05-01
Series:F1000Research
Subjects:
Bioinformatics
Online Access:https://f1000research.com/articles/6-97/v2
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spelling doaj-dd9e5bf8fcfe4a48a331f1980744c68c2020-11-25T03:49:51ZengF1000 Research LtdF1000Research2046-14022017-05-01610.12688/f1000research.10742.212496haploR: an R package for querying web-based annotation tools [version 2; referees: 2 approved, 1 approved with reservations]Ilya Y. Zhbannikov0Konstantin Arbeev1Svetlana Ukraintseva2Anatoliy I. Yashin3Biodemography of Aging Research Unit (BARU) at Social Science Research Institute, Duke University, Durham, NC, USABiodemography of Aging Research Unit (BARU) at Social Science Research Institute, Duke University, Durham, NC, USADuke Population Research Institute, Duke University, Durham, NC, USABiodemography of Aging Research Unit (BARU) at Social Science Research Institute, Duke University, Durham, NC, USAWe developed haploR, an R package for querying web based genome annotation tools HaploReg and RegulomeDB. haploR gathers information in a data frame which is suitable for downstream bioinformatic analyses. This will facilitate post-genome wide association studies streamline analysis for rapid discovery and interpretation of genetic associations.https://f1000research.com/articles/6-97/v2Bioinformatics
collection DOAJ
language English
format Article
sources DOAJ
author Ilya Y. Zhbannikov
Konstantin Arbeev
Svetlana Ukraintseva
Anatoliy I. Yashin
spellingShingle Ilya Y. Zhbannikov
Konstantin Arbeev
Svetlana Ukraintseva
Anatoliy I. Yashin
haploR: an R package for querying web-based annotation tools [version 2; referees: 2 approved, 1 approved with reservations]
F1000Research
Bioinformatics
author_facet Ilya Y. Zhbannikov
Konstantin Arbeev
Svetlana Ukraintseva
Anatoliy I. Yashin
author_sort Ilya Y. Zhbannikov
title haploR: an R package for querying web-based annotation tools [version 2; referees: 2 approved, 1 approved with reservations]
title_short haploR: an R package for querying web-based annotation tools [version 2; referees: 2 approved, 1 approved with reservations]
title_full haploR: an R package for querying web-based annotation tools [version 2; referees: 2 approved, 1 approved with reservations]
title_fullStr haploR: an R package for querying web-based annotation tools [version 2; referees: 2 approved, 1 approved with reservations]
title_full_unstemmed haploR: an R package for querying web-based annotation tools [version 2; referees: 2 approved, 1 approved with reservations]
title_sort haplor: an r package for querying web-based annotation tools [version 2; referees: 2 approved, 1 approved with reservations]
publisher F1000 Research Ltd
series F1000Research
issn 2046-1402
publishDate 2017-05-01
description We developed haploR, an R package for querying web based genome annotation tools HaploReg and RegulomeDB. haploR gathers information in a data frame which is suitable for downstream bioinformatic analyses. This will facilitate post-genome wide association studies streamline analysis for rapid discovery and interpretation of genetic associations.
topic Bioinformatics
url https://f1000research.com/articles/6-97/v2
work_keys_str_mv AT ilyayzhbannikov haploranrpackageforqueryingwebbasedannotationtoolsversion2referees2approved1approvedwithreservations
AT konstantinarbeev haploranrpackageforqueryingwebbasedannotationtoolsversion2referees2approved1approvedwithreservations
AT svetlanaukraintseva haploranrpackageforqueryingwebbasedannotationtoolsversion2referees2approved1approvedwithreservations
AT anatoliyiyashin haploranrpackageforqueryingwebbasedannotationtoolsversion2referees2approved1approvedwithreservations
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