Selection of Optimal Hyperspectral Wavebands for Detection of Discolored, Diseased Rice Seeds

The inspection of rice grain that may be infected by seedborne disease is important for ensuring uniform plant stands in production fields as well as preventing proliferation of some seedborne diseases. The goal of this study was to use a hyperspectral imaging (HSI) technique to find optimal wavelen...

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Main Authors: Insuck Baek, Moon S. Kim, Byoung-Kwan Cho, Changyeun Mo, Jinyoung Y. Barnaby, Anna M. McClung, Mirae Oh
Format: Article
Language:English
Published: MDPI AG 2019-03-01
Series:Applied Sciences
Subjects:
SVM
LDA
QDA
Online Access:http://www.mdpi.com/2076-3417/9/5/1027
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spelling doaj-de5de32dd2754d37b9d375c26e5f67752020-11-24T21:20:54ZengMDPI AGApplied Sciences2076-34172019-03-0195102710.3390/app9051027app9051027Selection of Optimal Hyperspectral Wavebands for Detection of Discolored, Diseased Rice SeedsInsuck Baek0Moon S. Kim1Byoung-Kwan Cho2Changyeun Mo3Jinyoung Y. Barnaby4Anna M. McClung5Mirae Oh6Department of Mechanical Engineering, University of Maryland-Baltimore County, 1000 Hilltop Circle, Baltimore, MD 21250, USAUSDA-ARS Environmental Microbial and Food Safety Laboratory, Henry A. Wallace Beltsville Agricultural Research Center, Beltsville, MD 20705, USADepartment of Biosystems Machinery Engineering, College of Agricultural and Life Science, Chungnam National University, 99 Daehar-ro, Yuseong-gu, Daejeon 34134, KoreaNational Institute of Agricultural Sciences, Rural Development Administration, 310 Nonsaengmyeong-ro, Wansan-gu, Jeonju-si, Jeollabuk-do 54875, KoreaUSDA-ARS Dale Bumpers National Rice Research Center, Stuttgart, AR 72160, USAUSDA-ARS Dale Bumpers National Rice Research Center, Stuttgart, AR 72160, USAUSDA-ARS Environmental Microbial and Food Safety Laboratory, Henry A. Wallace Beltsville Agricultural Research Center, Beltsville, MD 20705, USAThe inspection of rice grain that may be infected by seedborne disease is important for ensuring uniform plant stands in production fields as well as preventing proliferation of some seedborne diseases. The goal of this study was to use a hyperspectral imaging (HSI) technique to find optimal wavelengths and develop a model for detecting discolored, diseased rice seed infected by bacterial panicle blight (Burkholderia glumae), a seedborne pathogen. For this purpose, the HSI data spanning the visible/near-infrared wavelength region between 400 and 1000 nm were collected for 500 sound and discolored rice seeds. For selecting optimal wavelengths to use for detecting diseased seed, a sequential forward selection (SFS) method combined with various spectral pretreatments was employed. To evaluate performance based on optimal wavelengths, support vector machine (SVM) and linear and quadratic discriminant analysis (LDA and QDA) models were developed for detection of discolored seeds. As a result, the violet and red regions of the visible spectrum were selected as key wavelengths reflecting the characteristics of the discolored rice seeds. When using only two or only three selected wavelengths, all of the classification methods achieved high classification accuracies over 90% for both the calibration and validation sample sets. The results of the study showed that only two to three wavelengths are needed to differentiate between discolored, diseased and sound rice, instead of using the entire HSI wavelength regions. This demonstrates the feasibility of developing a low cost multispectral imaging technology based on these selected wavelengths for non-destructive and high-throughput screening of diseased rice seed.http://www.mdpi.com/2076-3417/9/5/1027diseased seedhyperspectral imagingSVMLDAQDAimage processing
collection DOAJ
language English
format Article
sources DOAJ
author Insuck Baek
Moon S. Kim
Byoung-Kwan Cho
Changyeun Mo
Jinyoung Y. Barnaby
Anna M. McClung
Mirae Oh
spellingShingle Insuck Baek
Moon S. Kim
Byoung-Kwan Cho
Changyeun Mo
Jinyoung Y. Barnaby
Anna M. McClung
Mirae Oh
Selection of Optimal Hyperspectral Wavebands for Detection of Discolored, Diseased Rice Seeds
Applied Sciences
diseased seed
hyperspectral imaging
SVM
LDA
QDA
image processing
author_facet Insuck Baek
Moon S. Kim
Byoung-Kwan Cho
Changyeun Mo
Jinyoung Y. Barnaby
Anna M. McClung
Mirae Oh
author_sort Insuck Baek
title Selection of Optimal Hyperspectral Wavebands for Detection of Discolored, Diseased Rice Seeds
title_short Selection of Optimal Hyperspectral Wavebands for Detection of Discolored, Diseased Rice Seeds
title_full Selection of Optimal Hyperspectral Wavebands for Detection of Discolored, Diseased Rice Seeds
title_fullStr Selection of Optimal Hyperspectral Wavebands for Detection of Discolored, Diseased Rice Seeds
title_full_unstemmed Selection of Optimal Hyperspectral Wavebands for Detection of Discolored, Diseased Rice Seeds
title_sort selection of optimal hyperspectral wavebands for detection of discolored, diseased rice seeds
publisher MDPI AG
series Applied Sciences
issn 2076-3417
publishDate 2019-03-01
description The inspection of rice grain that may be infected by seedborne disease is important for ensuring uniform plant stands in production fields as well as preventing proliferation of some seedborne diseases. The goal of this study was to use a hyperspectral imaging (HSI) technique to find optimal wavelengths and develop a model for detecting discolored, diseased rice seed infected by bacterial panicle blight (Burkholderia glumae), a seedborne pathogen. For this purpose, the HSI data spanning the visible/near-infrared wavelength region between 400 and 1000 nm were collected for 500 sound and discolored rice seeds. For selecting optimal wavelengths to use for detecting diseased seed, a sequential forward selection (SFS) method combined with various spectral pretreatments was employed. To evaluate performance based on optimal wavelengths, support vector machine (SVM) and linear and quadratic discriminant analysis (LDA and QDA) models were developed for detection of discolored seeds. As a result, the violet and red regions of the visible spectrum were selected as key wavelengths reflecting the characteristics of the discolored rice seeds. When using only two or only three selected wavelengths, all of the classification methods achieved high classification accuracies over 90% for both the calibration and validation sample sets. The results of the study showed that only two to three wavelengths are needed to differentiate between discolored, diseased and sound rice, instead of using the entire HSI wavelength regions. This demonstrates the feasibility of developing a low cost multispectral imaging technology based on these selected wavelengths for non-destructive and high-throughput screening of diseased rice seed.
topic diseased seed
hyperspectral imaging
SVM
LDA
QDA
image processing
url http://www.mdpi.com/2076-3417/9/5/1027
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