Soil microbiomes of reclaimed and abandoned mines of the Yamal region
Here we investigate the microbiomes of the soil samples from the Yamal Peninsula (the surroundings of Salekhard city, Russian Federation) using a high-throughput sequencing approach. The main goal was to investigate the impact of mining on soils within the following regeneration, both during the rec...
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doaj-e07360c1e89e4baeb7e26c353bee82e32020-11-25T03:34:15ZengPolish Academy of SciencesPolish Polar Research2081-82622020-02-014119511410.24425/ppr.2020.132571Soil microbiomes of reclaimed and abandoned mines of the Yamal region Pershina Elizaveta0Ivanova Ekaterina1Kimeklis Anastasia2Zverev Alexey3Kichko Arina4Aksenova Tatiana 5Andronov Evgeny6Abakumov Evgeny 7Saint-Petersburg State University, Saint-Petersburg, Russia ; All-Russia Research Institute for Agricultural Microbiology, Saint-Petersburg, RussiaAll-Russia Research Institute for Agricultural Microbiology, Saint-Petersburg, Russia ; Dokuchaev Soil Institute, Moscow, Russia ; Agrophysical Research Institute, Saint-Petersburg, RussiaAll-Russia Research Institute for Agricultural Microbiology, Saint-Petersburg, Russia All-Russia Research Institute for Agricultural Microbiology, Saint-Petersburg, Russia All-Russia Research Institute for Agricultural Microbiology, Saint-Petersburg, Russia All-Russia Research Institute for Agricultural Microbiology, Saint-Petersburg, Russia Saint-Petersburg State University, Saint-Petersburg, Russia ; All-Russia Research Institute for Agricultural Microbiology, Saint-Petersburg, RussiaSaint-Petersburg State University, Saint-Petersburg, RussiaHere we investigate the microbiomes of the soil samples from the Yamal Peninsula (the surroundings of Salekhard city, Russian Federation) using a high-throughput sequencing approach. The main goal was to investigate the impact of mining on soils within the following regeneration, both during the reclamation practice and natural self-growth. Several quarries were studied, engaged in sand, clay and chromatic ores mining. The taxonomic analysis of the soil microbiomes revealed 50 bacterial and archaeal phyla; among the dominant phyla were: Proteobacteria, Actinobacteria, Acidobacteria, Chroloflexi, Gemmatimonadetes, Verrucomicrobia, Planctomycetes, Bacteroidetes, AD3, and Nitrospirae. Compared to the typical tundra soil, which was chosen as a control, the disturbed soils had increased biodiversity and total counts for soil bacteria, archaea, and fungi, especially in the cryosolic horizon. The different mining strategies caused significantly different transformations of soil microbiomes, which was less pronounced for self-growth compared to reclaimed quarries. This isolation of the reclaimed quarry was mainly associated with the increase of the amount of acidobacteria (fam. Koribacteraceae and Acidobacteriaceae and order Ellin6513), some proteobacterial taxa (fam. Syntrophobacteraceae), and Chloroflexi (fam. Thermogemmatisporaceae). The study also revealed bacteria, which tend to be specific for marine tundra environments: gemmatimonadetes from the order N1423WL and Chloroflexi bacteria from the order Gitt-GS-136.http://journals.pan.pl/dlibra/publication/132571/edition/115835/contentarcticyamal peninsulamicrobiomesoilhigh-throughput sequencing16s rrnaqpcrminingreclamation |
collection |
DOAJ |
language |
English |
format |
Article |
sources |
DOAJ |
author |
Pershina Elizaveta Ivanova Ekaterina Kimeklis Anastasia Zverev Alexey Kichko Arina Aksenova Tatiana Andronov Evgeny Abakumov Evgeny |
spellingShingle |
Pershina Elizaveta Ivanova Ekaterina Kimeklis Anastasia Zverev Alexey Kichko Arina Aksenova Tatiana Andronov Evgeny Abakumov Evgeny Soil microbiomes of reclaimed and abandoned mines of the Yamal region Polish Polar Research arctic yamal peninsula microbiome soil high-throughput sequencing 16s rrna qpcr mining reclamation |
author_facet |
Pershina Elizaveta Ivanova Ekaterina Kimeklis Anastasia Zverev Alexey Kichko Arina Aksenova Tatiana Andronov Evgeny Abakumov Evgeny |
author_sort |
Pershina Elizaveta |
title |
Soil microbiomes of reclaimed and abandoned mines of the Yamal region |
title_short |
Soil microbiomes of reclaimed and abandoned mines of the Yamal region |
title_full |
Soil microbiomes of reclaimed and abandoned mines of the Yamal region |
title_fullStr |
Soil microbiomes of reclaimed and abandoned mines of the Yamal region |
title_full_unstemmed |
Soil microbiomes of reclaimed and abandoned mines of the Yamal region |
title_sort |
soil microbiomes of reclaimed and abandoned mines of the yamal region |
publisher |
Polish Academy of Sciences |
series |
Polish Polar Research |
issn |
2081-8262 |
publishDate |
2020-02-01 |
description |
Here we investigate the microbiomes of the soil samples from the Yamal Peninsula (the surroundings of Salekhard city, Russian Federation) using a high-throughput sequencing approach. The main goal was to investigate the impact of mining on soils within the following regeneration, both during the reclamation practice and natural self-growth. Several quarries were studied, engaged in sand, clay and chromatic ores mining. The taxonomic analysis of the soil microbiomes revealed 50 bacterial and archaeal phyla; among the dominant phyla were: Proteobacteria, Actinobacteria, Acidobacteria, Chroloflexi, Gemmatimonadetes, Verrucomicrobia, Planctomycetes, Bacteroidetes, AD3, and Nitrospirae. Compared to the typical tundra soil, which was chosen as a control, the disturbed soils had increased biodiversity and total counts for soil bacteria, archaea, and fungi, especially in the cryosolic horizon. The different mining strategies caused significantly different transformations of soil microbiomes, which was less pronounced for self-growth compared to reclaimed quarries. This isolation of the reclaimed quarry was mainly associated with the increase of the amount of acidobacteria (fam. Koribacteraceae and Acidobacteriaceae and order Ellin6513), some proteobacterial taxa (fam. Syntrophobacteraceae), and Chloroflexi (fam. Thermogemmatisporaceae). The study also revealed bacteria, which tend to be specific for marine tundra environments: gemmatimonadetes from the order N1423WL and Chloroflexi bacteria from the order Gitt-GS-136. |
topic |
arctic yamal peninsula microbiome soil high-throughput sequencing 16s rrna qpcr mining reclamation |
url |
http://journals.pan.pl/dlibra/publication/132571/edition/115835/content |
work_keys_str_mv |
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