Validation and Selection of New Reference Genes for RT-qPCR Analysis in Pediatric Glioma of Different Grades

Gliomas are heterogeneous, solid, and intracranial tumors that originate from glial cells. Malignant cells from the tumor undergo metabolic alterations to obtain the energy required for proliferation and the invasion of the cerebral parenchyma. The alterations in the expression of the genes related...

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Main Authors: Beatriz Hernández-Ochoa, Fabiola Fernández-Rosario, Rosa Angelica Castillo-Rodríguez, Alfonso Marhx-Bracho, Noemí Cárdenas-Rodríguez, Víctor Martínez-Rosas, Laura Morales-Luna, Abigail González-Valdez, Ernesto Calderón-Jaimes, Verónica Pérez de la Cruz, Sandra Rivera-Gutiérrez, Sergio Meza-Toledo, Carlos Wong-Baeza, Isabel Baeza-Ramírez, Saúl Gómez-Manzo
Format: Article
Language:English
Published: MDPI AG 2021-08-01
Series:Genes
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Online Access:https://www.mdpi.com/2073-4425/12/9/1335
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Summary:Gliomas are heterogeneous, solid, and intracranial tumors that originate from glial cells. Malignant cells from the tumor undergo metabolic alterations to obtain the energy required for proliferation and the invasion of the cerebral parenchyma. The alterations in the expression of the genes related to the metabolic pathways can be detected in biopsies of gliomas of different CNS WHO grades. In this study, we evaluated the expression of 16 candidate reference genes in the HMC3 microglia cell line. Then, statistical algorithms such as BestKeeper, the comparative ΔC<sub>T</sub> method, geNorm, NormFinder, and RefFinder were applied to obtain the genes most suitable to be considered as references for measuring the levels of expression in glioma samples. The results show that <i>PKM</i> and <i>TPI1</i> are two novel genes suitable for genic expression studies on gliomas. Finally, we analyzed the expression of genes involved in metabolic pathways in clinical samples of brain gliomas of different CNS WHO grades. RT-qPCR analysis showed that in CNS WHO grade 3 and 4 gliomas, the expression levels of <i>HK1</i>, <i>PFKM</i>, <i>GAPDH</i>, <i>G6PD</i>, <i>PGD1</i>, <i>IDH1</i>, <i>FASN</i>, <i>ACACA</i>, and <i>ELOVL2</i> were higher than those of CNS WHO grade 1 and 2 glioma biopsies. Hence, our results suggest that reference genes from metabolic pathways have different expression profiles depending on the stratification of gliomas and constitute a potential model for studying the development of this type of tumor and the search for molecular targets to treat gliomas.
ISSN:2073-4425