Genetic characterisation and population structure analysis of Anatolian figs (Ficus carica L.) by SSR markers
The common fig (Ficus carica L.) is a tree species and is one of the oldest fruit trees cultivated in Turkey. The Western Anatolian region of Turkey produces nearly a quarter of the total dried fig production of the world. This region also harbours a rich fig germplasm. However, so far this germplas...
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doaj-e85508dd43c644e884a00e650078b7c82021-09-22T06:13:25ZengSciendoFolia Horticulturae2083-59652021-03-01331497810.2478/fhort-2021-0005Genetic characterisation and population structure analysis of Anatolian figs (Ficus carica L.) by SSR markersErgül Ali0Büyük Burcu Pelin1Hazrati Nahid2Yılmaz Funda3Kazan Kemal4Arslan Nur5Özmen Canan Yüksel6Aydın Semra Soydam7Bakır Melike8Tan Nilgün9Kösoğlu İlknur10Çobanoğlu Ferit11Biotechnology Institute, Ankara University, Ankara, TurkeyBiotechnology Institute, Ankara University, Ankara, TurkeyBiotechnology Institute, Ankara University, Ankara, TurkeyBiotechnology Institute, Ankara University, Ankara, TurkeyCommonwealth Scientific and Industrial Research Organization (CSIRO), Agriculture and Food, Queensland Bioscience Precinct, St. Lucia, Queensland4067, AustraliaBiotechnology Institute, Ankara University, Ankara, TurkeyBiotechnology Institute, Ankara University, Ankara, TurkeyTurkish Medicines and Medical Device Agency, Ministry of Health, Ankara, TurkeyDepartment of Agricultural Biotechnology, Faculty of Agriculture, Erciyes University, Kayseri, TurkeyFood Technologies Section, Fig Research Institute, General Directorate of Agricultural Researches and Policies, Ministry of Agriculture and Forestry, Aydın, TurkeyMedical and Aromatic Plants Section, Aegean Agricultural Research Institute, General Directorate of Agricultural Researches and Policies, Ministry of Agriculture and Forestry, İzmir, TurkeyDepartment of Agricultural Economics, Faculty of Agriculture, Aydın Adnan Menderes University, Aydın, TurkeyThe common fig (Ficus carica L.) is a tree species and is one of the oldest fruit trees cultivated in Turkey. The Western Anatolian region of Turkey produces nearly a quarter of the total dried fig production of the world. This region also harbours a rich fig germplasm. However, so far this germplasm has remained largely uncharacterised. In this study, using 14 simple sequence repeat (SSR) primer pairs, we analysed a total of 310 fig accessions from six different regions of Anatolia. In structure analyses, Western Anatolian accessions formed a group, which was correlated with their geographical distribution. In addition, 7 identical, 36 synonymous, and 22 homonymous fig accessions were identified. In multilocus lineages (MLLs) analysis a total of 54 accessions were matched to different accessions as clone assignment. The results will facilitate future germplasm management and breeding efforts in this economically important tree species by identifying genetic diversity, genetic relations and characterising the structure of studied populations and accessions.https://doi.org/10.2478/fhort-2021-0005anatolia germplasmficus carica l.genetic structure analysismicrosatellite |
collection |
DOAJ |
language |
English |
format |
Article |
sources |
DOAJ |
author |
Ergül Ali Büyük Burcu Pelin Hazrati Nahid Yılmaz Funda Kazan Kemal Arslan Nur Özmen Canan Yüksel Aydın Semra Soydam Bakır Melike Tan Nilgün Kösoğlu İlknur Çobanoğlu Ferit |
spellingShingle |
Ergül Ali Büyük Burcu Pelin Hazrati Nahid Yılmaz Funda Kazan Kemal Arslan Nur Özmen Canan Yüksel Aydın Semra Soydam Bakır Melike Tan Nilgün Kösoğlu İlknur Çobanoğlu Ferit Genetic characterisation and population structure analysis of Anatolian figs (Ficus carica L.) by SSR markers Folia Horticulturae anatolia germplasm ficus carica l. genetic structure analysis microsatellite |
author_facet |
Ergül Ali Büyük Burcu Pelin Hazrati Nahid Yılmaz Funda Kazan Kemal Arslan Nur Özmen Canan Yüksel Aydın Semra Soydam Bakır Melike Tan Nilgün Kösoğlu İlknur Çobanoğlu Ferit |
author_sort |
Ergül Ali |
title |
Genetic characterisation and population structure analysis of Anatolian figs (Ficus carica L.) by SSR markers |
title_short |
Genetic characterisation and population structure analysis of Anatolian figs (Ficus carica L.) by SSR markers |
title_full |
Genetic characterisation and population structure analysis of Anatolian figs (Ficus carica L.) by SSR markers |
title_fullStr |
Genetic characterisation and population structure analysis of Anatolian figs (Ficus carica L.) by SSR markers |
title_full_unstemmed |
Genetic characterisation and population structure analysis of Anatolian figs (Ficus carica L.) by SSR markers |
title_sort |
genetic characterisation and population structure analysis of anatolian figs (ficus carica l.) by ssr markers |
publisher |
Sciendo |
series |
Folia Horticulturae |
issn |
2083-5965 |
publishDate |
2021-03-01 |
description |
The common fig (Ficus carica L.) is a tree species and is one of the oldest fruit trees cultivated in Turkey. The Western Anatolian region of Turkey produces nearly a quarter of the total dried fig production of the world. This region also harbours a rich fig germplasm. However, so far this germplasm has remained largely uncharacterised. In this study, using 14 simple sequence repeat (SSR) primer pairs, we analysed a total of 310 fig accessions from six different regions of Anatolia. In structure analyses, Western Anatolian accessions formed a group, which was correlated with their geographical distribution. In addition, 7 identical, 36 synonymous, and 22 homonymous fig accessions were identified. In multilocus lineages (MLLs) analysis a total of 54 accessions were matched to different accessions as clone assignment. The results will facilitate future germplasm management and breeding efforts in this economically important tree species by identifying genetic diversity, genetic relations and characterising the structure of studied populations and accessions. |
topic |
anatolia germplasm ficus carica l. genetic structure analysis microsatellite |
url |
https://doi.org/10.2478/fhort-2021-0005 |
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