Geminiviruses Associated with the Weed Species Ageratum conyzoides, Centipeda minima, Porophyllum ruderale, and Spilanthes iabadicensis from Java, Indonesia
Geminivirus has a wide host range including cultivated plants and weeds. Infected weeds may play an important role in disease epidemic. Unfortunately, little is known about weeds species that may serve as alternative host for Geminivirus. This research was conducted to identify Geminivirus on weeds...
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doaj-eafde5d41f254d75a0e958d71513792f2021-08-20T12:59:04ZengIndonesian Society for MicrobiologyMicrobiology Indonesia1978-34772087-85752012-01-015310.5454/mi.5.3.4Geminiviruses Associated with the Weed Species Ageratum conyzoides, Centipeda minima, Porophyllum ruderale, and Spilanthes iabadicensis from Java, IndonesiaRIKA MELIANSYAH0SR HENDRASTUTI HIDAYAT1KIKIN HAMZAH MUTAQIN2Department of Plant Protection, Faculty of Agriculture, Institut Pertanian BogorDepartment of Plant Protection, Faculty of Agriculture, Institut Pertanian BogorDepartment of Plant Protection, Faculty of Agriculture, Institut Pertanian BogorGeminivirus has a wide host range including cultivated plants and weeds. Infected weeds may play an important role in disease epidemic. Unfortunately, little is known about weeds species that may serve as alternative host for Geminivirus. This research was conducted to identify Geminivirus on weeds around chili pepper field to study their potential role as virus reservoir. Field surveys were conducted to chilli pepper growing area inWest and Central Java Provinces, and The Special Province of Yogyakarta during 2009 to collect symptomatic weed plants. Geminivirus infection was detected using PCR technique from 9 weed samples, i.e. 5 samples Ageratum conyzoides from Bogor (AgrBgr), Sukabumi (AgrSkm), Magelang (AgrMgl), Sleman (AgrJgy), and Garut (AgrGrt); Centipeda minima from Magelang (CtpMgl); A. boehmerioides from Sleman (AcpJgy); Porophyllum ruderale from Bogor (PrlBgr); Spilanthes iabadicensis from Magelang (SplMgl). Further genetic analysis showed that those geminiviruses can be differentiated into 2 clusters, showing the possible genetic differences among them. They neither have a close relationship with other geminiviruses published earlier in the GenBank, indicating weed infecting collected Geminivirus in this study is possibly a distinct Geminivirus.https://jurnal.permi.or.id/index.php/mionline/article/view/148BegomovirusGeminiviruspolymerase chain reactionweed species |
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DOAJ |
language |
English |
format |
Article |
sources |
DOAJ |
author |
RIKA MELIANSYAH SR HENDRASTUTI HIDAYAT KIKIN HAMZAH MUTAQIN |
spellingShingle |
RIKA MELIANSYAH SR HENDRASTUTI HIDAYAT KIKIN HAMZAH MUTAQIN Geminiviruses Associated with the Weed Species Ageratum conyzoides, Centipeda minima, Porophyllum ruderale, and Spilanthes iabadicensis from Java, Indonesia Microbiology Indonesia Begomovirus Geminivirus polymerase chain reaction weed species |
author_facet |
RIKA MELIANSYAH SR HENDRASTUTI HIDAYAT KIKIN HAMZAH MUTAQIN |
author_sort |
RIKA MELIANSYAH |
title |
Geminiviruses Associated with the Weed Species Ageratum conyzoides, Centipeda minima, Porophyllum ruderale, and Spilanthes iabadicensis from Java, Indonesia |
title_short |
Geminiviruses Associated with the Weed Species Ageratum conyzoides, Centipeda minima, Porophyllum ruderale, and Spilanthes iabadicensis from Java, Indonesia |
title_full |
Geminiviruses Associated with the Weed Species Ageratum conyzoides, Centipeda minima, Porophyllum ruderale, and Spilanthes iabadicensis from Java, Indonesia |
title_fullStr |
Geminiviruses Associated with the Weed Species Ageratum conyzoides, Centipeda minima, Porophyllum ruderale, and Spilanthes iabadicensis from Java, Indonesia |
title_full_unstemmed |
Geminiviruses Associated with the Weed Species Ageratum conyzoides, Centipeda minima, Porophyllum ruderale, and Spilanthes iabadicensis from Java, Indonesia |
title_sort |
geminiviruses associated with the weed species ageratum conyzoides, centipeda minima, porophyllum ruderale, and spilanthes iabadicensis from java, indonesia |
publisher |
Indonesian Society for Microbiology |
series |
Microbiology Indonesia |
issn |
1978-3477 2087-8575 |
publishDate |
2012-01-01 |
description |
Geminivirus has a wide host range including cultivated plants and weeds. Infected weeds may play an important role in disease epidemic. Unfortunately, little is known about weeds species that may serve as alternative host for Geminivirus. This research was conducted to identify Geminivirus on weeds around chili pepper field to study their potential role as virus reservoir. Field surveys were conducted to chilli pepper growing area inWest and Central Java Provinces, and The Special Province of Yogyakarta during 2009 to collect symptomatic weed plants. Geminivirus infection was detected using PCR technique from 9 weed samples, i.e. 5 samples Ageratum conyzoides from Bogor (AgrBgr), Sukabumi (AgrSkm), Magelang (AgrMgl), Sleman (AgrJgy), and Garut (AgrGrt); Centipeda minima from Magelang (CtpMgl); A. boehmerioides from Sleman (AcpJgy); Porophyllum ruderale from Bogor (PrlBgr); Spilanthes iabadicensis from Magelang (SplMgl). Further genetic analysis showed that those geminiviruses can be differentiated into 2 clusters, showing the possible genetic differences among them. They neither have a close relationship with other geminiviruses published earlier in the GenBank, indicating weed infecting collected Geminivirus in this study is possibly a distinct Geminivirus. |
topic |
Begomovirus Geminivirus polymerase chain reaction weed species |
url |
https://jurnal.permi.or.id/index.php/mionline/article/view/148 |
work_keys_str_mv |
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