G1957C variation in Core Promoter and Precore/Core regions of Hepatitis B virus isolated from men who have sex with men (MSM) in Surakarta, Central Java, Indonesia

Prasetyo AA, Sariyatun R, Prasetyo AD, Yudistiro I, Sidhajati RA. 2014. G1957C variation in Core Promoter and Precore/Core regions of Hepatitis B virus isolated from men who have sex with men (MSM) in Surakarta, Central Java, Indonesia. Nusantara Bioscience 6: 107-110. Little is known about HBV isol...

Full description

Bibliographic Details
Main Authors: AFIONO AGUNG PRASETYO, RATNA SARIYATUN, ANGGA DWI PRASETYO, RADEN ARTHESWARA SIDHAJATI
Format: Article
Language:English
Published: MBI & UNS Solo 2014-11-01
Series:Nusantara Bioscience
Subjects:
HBV
MSM
Online Access:http://biosains.mipa.uns.ac.id/N/N0602/N060201.pdf
id doaj-ecce06cd08a54d65acefb15c4fdde95e
record_format Article
spelling doaj-ecce06cd08a54d65acefb15c4fdde95e2020-11-25T03:59:01ZengMBI & UNS SoloNusantara Bioscience2087-39482087-39562014-11-016210711010.13057/nusbiosci/n060201G1957C variation in Core Promoter and Precore/Core regions of Hepatitis B virus isolated from men who have sex with men (MSM) in Surakarta, Central Java, IndonesiaAFIONO AGUNG PRASETYO0RATNA SARIYATUN1ANGGA DWI PRASETYO2RADEN ARTHESWARA SIDHAJATI3Department of Microbiology, Faculty of Medicine, Sebelas Maret University, Jl. Ir. Sutami 36A, Surakarta 57126, Indonesia. Tel./fax.: +62-271-632489. email: afie@staff.uns.ac.id, afie.agp.la@gmail.com, afieagp@yahoo.com; A-IGIC (A-Infection, Genomic, Immunology & Cancer) Research Group, Sebelas Maret University, Jl. Ir. Sutami 36A, Surakarta 57126, Indonesia; Center of Biotechnology and Biodiversity Research and Development, Sebelas Maret University, Jl. Ir. Sutami 36A, Surakarta 57126, Indonesia.Department of Microbiology, Faculty of Medicine, Sebelas Maret University, Jl. Ir. Sutami 36A, Surakarta 57126, Indonesia; A-IGIC (A-Infection, Genomic, Immunology & Cancer) Research Group, Sebelas Maret University, Jl. Ir. Sutami 36A, Surakarta 57126, IndonesiaDepartment of Microbiology, Faculty of Medicine, Sebelas Maret University, Jl. Ir. Sutami 36A, Surakarta 57126, IndonesiaDepartment of Microbiology, Faculty of Medicine, Sebelas Maret University, Jl. Ir. Sutami 36A, Surakarta 57126, IndonesiaPrasetyo AA, Sariyatun R, Prasetyo AD, Yudistiro I, Sidhajati RA. 2014. G1957C variation in Core Promoter and Precore/Core regions of Hepatitis B virus isolated from men who have sex with men (MSM) in Surakarta, Central Java, Indonesia. Nusantara Bioscience 6: 107-110. Little is known about HBV isolates in Indonesian men who have sex with men (MSM) community. Thus, this study was aimed to analyze the genetic profile of HBV isolated from MSM in Indonesia, particularly in Surakarta, Central Java. A total of 205 blood samples were examined by polymerase chain reaction (PCR) targeting the partial Core Promoter (CP) and Precore/Core (preC/C) regions. Three samples were found positive by PCR. The amplicons were sequenced and subjected to molecular analysis. The genetic profile of all HBV isolated in Indonesia (n= 122) were also included for molecular analysis. All HBV isolated from the MSM were genotype B3. G1957C (C195S) was found in all HBV isolated from the MSM community and subject with sex with man history. Several disease-related mutations were observed among HBV sequences from Indonesia, including T1753C, A1762T, G1764A, A1846T, and G1896A which existed in 7.2% (9/125), 17.6% (22/125), 19.2% (24/125), 16.8% (21/125), and 24.8% (31/125) sequences, respectively; however, none were present in HBV isolated from the MSM. In conclusion, various mutations, including those related to disease, were found in Indonesian HBV isolates. G1957C variation was unique in the HBV isolated from the MSM. http://biosains.mipa.uns.ac.id/N/N0602/N060201.pdfCentral JavacoreHBVIndonesiaMSM
collection DOAJ
language English
format Article
sources DOAJ
author AFIONO AGUNG PRASETYO
RATNA SARIYATUN
ANGGA DWI PRASETYO
RADEN ARTHESWARA SIDHAJATI
spellingShingle AFIONO AGUNG PRASETYO
RATNA SARIYATUN
ANGGA DWI PRASETYO
RADEN ARTHESWARA SIDHAJATI
G1957C variation in Core Promoter and Precore/Core regions of Hepatitis B virus isolated from men who have sex with men (MSM) in Surakarta, Central Java, Indonesia
Nusantara Bioscience
Central Java
core
HBV
Indonesia
MSM
author_facet AFIONO AGUNG PRASETYO
RATNA SARIYATUN
ANGGA DWI PRASETYO
RADEN ARTHESWARA SIDHAJATI
author_sort AFIONO AGUNG PRASETYO
title G1957C variation in Core Promoter and Precore/Core regions of Hepatitis B virus isolated from men who have sex with men (MSM) in Surakarta, Central Java, Indonesia
title_short G1957C variation in Core Promoter and Precore/Core regions of Hepatitis B virus isolated from men who have sex with men (MSM) in Surakarta, Central Java, Indonesia
title_full G1957C variation in Core Promoter and Precore/Core regions of Hepatitis B virus isolated from men who have sex with men (MSM) in Surakarta, Central Java, Indonesia
title_fullStr G1957C variation in Core Promoter and Precore/Core regions of Hepatitis B virus isolated from men who have sex with men (MSM) in Surakarta, Central Java, Indonesia
title_full_unstemmed G1957C variation in Core Promoter and Precore/Core regions of Hepatitis B virus isolated from men who have sex with men (MSM) in Surakarta, Central Java, Indonesia
title_sort g1957c variation in core promoter and precore/core regions of hepatitis b virus isolated from men who have sex with men (msm) in surakarta, central java, indonesia
publisher MBI & UNS Solo
series Nusantara Bioscience
issn 2087-3948
2087-3956
publishDate 2014-11-01
description Prasetyo AA, Sariyatun R, Prasetyo AD, Yudistiro I, Sidhajati RA. 2014. G1957C variation in Core Promoter and Precore/Core regions of Hepatitis B virus isolated from men who have sex with men (MSM) in Surakarta, Central Java, Indonesia. Nusantara Bioscience 6: 107-110. Little is known about HBV isolates in Indonesian men who have sex with men (MSM) community. Thus, this study was aimed to analyze the genetic profile of HBV isolated from MSM in Indonesia, particularly in Surakarta, Central Java. A total of 205 blood samples were examined by polymerase chain reaction (PCR) targeting the partial Core Promoter (CP) and Precore/Core (preC/C) regions. Three samples were found positive by PCR. The amplicons were sequenced and subjected to molecular analysis. The genetic profile of all HBV isolated in Indonesia (n= 122) were also included for molecular analysis. All HBV isolated from the MSM were genotype B3. G1957C (C195S) was found in all HBV isolated from the MSM community and subject with sex with man history. Several disease-related mutations were observed among HBV sequences from Indonesia, including T1753C, A1762T, G1764A, A1846T, and G1896A which existed in 7.2% (9/125), 17.6% (22/125), 19.2% (24/125), 16.8% (21/125), and 24.8% (31/125) sequences, respectively; however, none were present in HBV isolated from the MSM. In conclusion, various mutations, including those related to disease, were found in Indonesian HBV isolates. G1957C variation was unique in the HBV isolated from the MSM.
topic Central Java
core
HBV
Indonesia
MSM
url http://biosains.mipa.uns.ac.id/N/N0602/N060201.pdf
work_keys_str_mv AT afionoagungprasetyo g1957cvariationincorepromoterandprecorecoreregionsofhepatitisbvirusisolatedfrommenwhohavesexwithmenmsminsurakartacentraljavaindonesia
AT ratnasariyatun g1957cvariationincorepromoterandprecorecoreregionsofhepatitisbvirusisolatedfrommenwhohavesexwithmenmsminsurakartacentraljavaindonesia
AT anggadwiprasetyo g1957cvariationincorepromoterandprecorecoreregionsofhepatitisbvirusisolatedfrommenwhohavesexwithmenmsminsurakartacentraljavaindonesia
AT radenartheswarasidhajati g1957cvariationincorepromoterandprecorecoreregionsofhepatitisbvirusisolatedfrommenwhohavesexwithmenmsminsurakartacentraljavaindonesia
_version_ 1724455934017667072