Dataset for transcriptome analysis of Salmonella enterica subsp. enterica serovar Typhimurium strain 14028S response to starvation
Salmonella enterica is an ubiquitous pathogen throughout the world causing gastroenteritis in humans and animals. Survival of pathogenic bacteria in the external environment may be associated with the ability to overcome the stress caused by starvation. The bacterial response to starvation is well u...
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doaj-ecd4c3afbfe04d538d2ada875f4d9d922020-11-25T03:44:59ZengElsevierData in Brief2352-34092020-08-0131106008Dataset for transcriptome analysis of Salmonella enterica subsp. enterica serovar Typhimurium strain 14028S response to starvationNatalia E. Gogoleva0Vladimir Ya. Kataev1Alexander S. Balkin2Andrey O. Plotnikov3Elena I. Shagimardanova4Anastasia M. Subbot5Sergey V. Cherkasov6Yuri V. Gogolev7Kazan Institute of Biochemistry and Biophysics, FRC Kazan Scientific Center of RAS, 2/31 Lobachevsky St., Kazan, 420111, Russian Federation; Institute for Cellular and Intracellular Symbiosis, Ural Branch of Russian Academy of Sciences, 11 Pionerskaya St., Orenburg, 460000, Russian FederationInstitute for Cellular and Intracellular Symbiosis, Ural Branch of Russian Academy of Sciences, 11 Pionerskaya St., Orenburg, 460000, Russian FederationInstitute for Cellular and Intracellular Symbiosis, Ural Branch of Russian Academy of Sciences, 11 Pionerskaya St., Orenburg, 460000, Russian FederationInstitute for Cellular and Intracellular Symbiosis, Ural Branch of Russian Academy of Sciences, 11 Pionerskaya St., Orenburg, 460000, Russian Federation; Corresponding author.Institute of Fundamental Medicine and Biology, Kazan (Volga Region) Federal University, 18 Kremlyovskaya St., Kazan, 420111, Russian FederationResearch Institute of Eye Diseases, 11 Rossolimo St., Moscow, 119021, Russian FederationInstitute for Cellular and Intracellular Symbiosis, Ural Branch of Russian Academy of Sciences, 11 Pionerskaya St., Orenburg, 460000, Russian FederationKazan Institute of Biochemistry and Biophysics, FRC Kazan Scientific Center of RAS, 2/31 Lobachevsky St., Kazan, 420111, Russian Federation; Institute of Fundamental Medicine and Biology, Kazan (Volga Region) Federal University, 18 Kremlyovskaya St., Kazan, 420111, Russian FederationSalmonella enterica is an ubiquitous pathogen throughout the world causing gastroenteritis in humans and animals. Survival of pathogenic bacteria in the external environment may be associated with the ability to overcome the stress caused by starvation. The bacterial response to starvation is well understood in laboratory cultures with a sufficiently high cell density. However, bacterial populations often have a small size when facing this challenge in natural biotopes. The aim of this work was to find out if there are differences in the transcriptomes of S. enterica depending on the factor of cell density during starvation. Here we present transcriptome data of Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S grown in carbon rich or carbon deficient medium with high or low cell density. These data will help identify genes involved in adaptation of low-density bacterial populations to starvation conditions.http://www.sciencedirect.com/science/article/pii/S2352340920309021Salmonella entericaStarvationLow-density populationRna-seqIllumina |
collection |
DOAJ |
language |
English |
format |
Article |
sources |
DOAJ |
author |
Natalia E. Gogoleva Vladimir Ya. Kataev Alexander S. Balkin Andrey O. Plotnikov Elena I. Shagimardanova Anastasia M. Subbot Sergey V. Cherkasov Yuri V. Gogolev |
spellingShingle |
Natalia E. Gogoleva Vladimir Ya. Kataev Alexander S. Balkin Andrey O. Plotnikov Elena I. Shagimardanova Anastasia M. Subbot Sergey V. Cherkasov Yuri V. Gogolev Dataset for transcriptome analysis of Salmonella enterica subsp. enterica serovar Typhimurium strain 14028S response to starvation Data in Brief Salmonella enterica Starvation Low-density population Rna-seq Illumina |
author_facet |
Natalia E. Gogoleva Vladimir Ya. Kataev Alexander S. Balkin Andrey O. Plotnikov Elena I. Shagimardanova Anastasia M. Subbot Sergey V. Cherkasov Yuri V. Gogolev |
author_sort |
Natalia E. Gogoleva |
title |
Dataset for transcriptome analysis of Salmonella enterica subsp. enterica serovar Typhimurium strain 14028S response to starvation |
title_short |
Dataset for transcriptome analysis of Salmonella enterica subsp. enterica serovar Typhimurium strain 14028S response to starvation |
title_full |
Dataset for transcriptome analysis of Salmonella enterica subsp. enterica serovar Typhimurium strain 14028S response to starvation |
title_fullStr |
Dataset for transcriptome analysis of Salmonella enterica subsp. enterica serovar Typhimurium strain 14028S response to starvation |
title_full_unstemmed |
Dataset for transcriptome analysis of Salmonella enterica subsp. enterica serovar Typhimurium strain 14028S response to starvation |
title_sort |
dataset for transcriptome analysis of salmonella enterica subsp. enterica serovar typhimurium strain 14028s response to starvation |
publisher |
Elsevier |
series |
Data in Brief |
issn |
2352-3409 |
publishDate |
2020-08-01 |
description |
Salmonella enterica is an ubiquitous pathogen throughout the world causing gastroenteritis in humans and animals. Survival of pathogenic bacteria in the external environment may be associated with the ability to overcome the stress caused by starvation. The bacterial response to starvation is well understood in laboratory cultures with a sufficiently high cell density. However, bacterial populations often have a small size when facing this challenge in natural biotopes. The aim of this work was to find out if there are differences in the transcriptomes of S. enterica depending on the factor of cell density during starvation. Here we present transcriptome data of Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S grown in carbon rich or carbon deficient medium with high or low cell density. These data will help identify genes involved in adaptation of low-density bacterial populations to starvation conditions. |
topic |
Salmonella enterica Starvation Low-density population Rna-seq Illumina |
url |
http://www.sciencedirect.com/science/article/pii/S2352340920309021 |
work_keys_str_mv |
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