Hybrid Plasma/Molecular-Dynamics Approach for Efficient XFEL Radiation Damage Simulations

X-ray free-electron laser pulses initiate a complex series of changes to the electronic and nuclear structure of matter on femtosecond timescales. These damage processes include widespread ionization, the formation of a quasi-plasma state and the ultimate explosion of the sample due to Coulomb force...

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Main Authors: Alexander Kozlov, Andrew V. Martin, Harry M. Quiney
Format: Article
Language:English
Published: MDPI AG 2020-06-01
Series:Crystals
Subjects:
Online Access:https://www.mdpi.com/2073-4352/10/6/478
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spelling doaj-ee339318aa604ef39d5a3fa66ad5f81a2020-11-25T04:01:41ZengMDPI AGCrystals2073-43522020-06-011047847810.3390/cryst10060478Hybrid Plasma/Molecular-Dynamics Approach for Efficient XFEL Radiation Damage SimulationsAlexander Kozlov0Andrew V. Martin1Harry M. Quiney2ARC Centre of Excellence in Advanced Molecular Imaging, School of Physics, University of Melbourne, Parkville VIC 3010, AustraliaSchool of Science, RMIT University, Melbourne VIC 3001, AustraliaARC Centre of Excellence in Advanced Molecular Imaging, School of Physics, University of Melbourne, Parkville VIC 3010, AustraliaX-ray free-electron laser pulses initiate a complex series of changes to the electronic and nuclear structure of matter on femtosecond timescales. These damage processes include widespread ionization, the formation of a quasi-plasma state and the ultimate explosion of the sample due to Coulomb forces. The accurate simulation of these dynamical effects is critical in designing feasible XFEL experiments and interpreting the results. Current molecular dynamics simulations are, however, computationally intensive, particularly when they treat unbound electrons as classical point particles. On the other hand, plasma simulations are computationally efficient but do not model atomic motion. Here we present a hybrid approach to XFEL damage simulation that combines molecular dynamics for the nuclear motion and plasma models to describe the evolution of the low-energy electron continuum. The plasma properties of the unbound electron gas are used to define modified inter-ionic potentials for the molecular dynamics, including Debye screening and drag forces. The hybrid approach is significantly faster than damage simulations that treat unbound electrons as classical particles, enabling simulations to be performed on large sample volumes.https://www.mdpi.com/2073-4352/10/6/478free-electron laserradiation damagesimulation
collection DOAJ
language English
format Article
sources DOAJ
author Alexander Kozlov
Andrew V. Martin
Harry M. Quiney
spellingShingle Alexander Kozlov
Andrew V. Martin
Harry M. Quiney
Hybrid Plasma/Molecular-Dynamics Approach for Efficient XFEL Radiation Damage Simulations
Crystals
free-electron laser
radiation damage
simulation
author_facet Alexander Kozlov
Andrew V. Martin
Harry M. Quiney
author_sort Alexander Kozlov
title Hybrid Plasma/Molecular-Dynamics Approach for Efficient XFEL Radiation Damage Simulations
title_short Hybrid Plasma/Molecular-Dynamics Approach for Efficient XFEL Radiation Damage Simulations
title_full Hybrid Plasma/Molecular-Dynamics Approach for Efficient XFEL Radiation Damage Simulations
title_fullStr Hybrid Plasma/Molecular-Dynamics Approach for Efficient XFEL Radiation Damage Simulations
title_full_unstemmed Hybrid Plasma/Molecular-Dynamics Approach for Efficient XFEL Radiation Damage Simulations
title_sort hybrid plasma/molecular-dynamics approach for efficient xfel radiation damage simulations
publisher MDPI AG
series Crystals
issn 2073-4352
publishDate 2020-06-01
description X-ray free-electron laser pulses initiate a complex series of changes to the electronic and nuclear structure of matter on femtosecond timescales. These damage processes include widespread ionization, the formation of a quasi-plasma state and the ultimate explosion of the sample due to Coulomb forces. The accurate simulation of these dynamical effects is critical in designing feasible XFEL experiments and interpreting the results. Current molecular dynamics simulations are, however, computationally intensive, particularly when they treat unbound electrons as classical point particles. On the other hand, plasma simulations are computationally efficient but do not model atomic motion. Here we present a hybrid approach to XFEL damage simulation that combines molecular dynamics for the nuclear motion and plasma models to describe the evolution of the low-energy electron continuum. The plasma properties of the unbound electron gas are used to define modified inter-ionic potentials for the molecular dynamics, including Debye screening and drag forces. The hybrid approach is significantly faster than damage simulations that treat unbound electrons as classical particles, enabling simulations to be performed on large sample volumes.
topic free-electron laser
radiation damage
simulation
url https://www.mdpi.com/2073-4352/10/6/478
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AT andrewvmartin hybridplasmamoleculardynamicsapproachforefficientxfelradiationdamagesimulations
AT harrymquiney hybridplasmamoleculardynamicsapproachforefficientxfelradiationdamagesimulations
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