Supporting data for the MS identification of distinct transferrin glycopeptide glycoforms and citrullinated peptides associated with inflammation or autoimmunity
This data article presents the results of all the statistical analyses applied to the relative intensities of the detected 2D-DiGE protein spots for each of the 3 performed DiGE experiments. The data reveals specific subsets of protein spots with significant differences between WT and CD38-deficient...
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doaj-ee79700cdda143ada4e35ed5ce3923f22020-11-25T01:28:32ZengElsevierData in Brief2352-34092016-03-016587602Supporting data for the MS identification of distinct transferrin glycopeptide glycoforms and citrullinated peptides associated with inflammation or autoimmunityA. Rosal-Vela0A. Barroso1E. Giménez2S. García-Rodríguez3V. Longobardo4J. Postigo5M. Iglesias6A. Lario7J. Merino8R. Merino9M. Zubiaur10V. Sanz-Nebot11J. Sancho12Instituto de Parasitología y Biomedicina “López-Neyra” (IPBLN), CSIC, Armilla, Granada, SpainDepartament de Química Analítica, Universitat de Barcelona, SpainDepartament de Química Analítica, Universitat de Barcelona, SpainDepartament de Química Analítica, Universitat de Barcelona, SpainUnidad de Proteómica, IPBLN, CSIC, Armilla, Granada, SpainFacultad de Medicina, Universidad de Cantabria, Santander, SpainFacultad de Medicina, Universidad de Cantabria, Santander, SpainUnidad de Proteómica, IPBLN, CSIC, Armilla, Granada, SpainFacultad de Medicina, Universidad de Cantabria, Santander, SpainInstituto de Biomedicina y Biotecnología de Cantabria, CSIC, Santander, SpainInstituto de Parasitología y Biomedicina “López-Neyra” (IPBLN), CSIC, Armilla, Granada, SpainDepartament de Química Analítica, Universitat de Barcelona, SpainInstituto de Parasitología y Biomedicina “López-Neyra” (IPBLN), CSIC, Armilla, Granada, Spain; Correspondence to: Instituto de Parasitología y Biomedicina López-Neyra, CSIC, Avenida del Conocimiento s/n, Parque Tecnológico de la Salud (PTS), 18016 Armilla (Granada), Spain. Tel.: +34 958181664; fax: +34 958181632.This data article presents the results of all the statistical analyses applied to the relative intensities of the detected 2D-DiGE protein spots for each of the 3 performed DiGE experiments. The data reveals specific subsets of protein spots with significant differences between WT and CD38-deficient mice with either Collagen-induced arthritis (CIA), or with chronic inflammation induced by CFA, or under steady-state conditions. This article also shows the MS data analyses that allowed the identification of the protein species which serve to discriminate the different experimental groups used in this study. Moreover, the article presents MS data on the citrullinated peptides linked to specific protein species that were generated in CIA+ or CFA-treated mice. Lastly, this data article provides MS data on the efficiency of the analyses of the transferrin (Tf) glycopeptide glycosylation pattern in spleen and serum from CIA+ mice and normal controls. The data supplied in this work is related to the research article entitled “identification of multiple transferrin species in spleen and serum from mice with collagen-induced arthritis which may reflect changes in transferrin glycosylation associated with disease activity: the role of CD38” [1]. All mass spectrometry data have been deposited to the ProteomeXchange Consortium via the PRIDE partner repository with identifiers PRIDE: http://www.ebi.ac.uk/pride/archive/projects/PXD002644, PRIDE: http://www.ebi.ac.uk/pride/archive/projects/PXD002643, PRIDE: http://www.ebi.ac.uk/pride/archive/projects/PXD003183 and PRIDE: http://www.ebi.ac.uk/pride/archive/projects/PXD003163. Keywords: Arthritis, Inflammation, Protein species, Transferrin, Glycosylation, CD38, Citrullinationhttp://www.sciencedirect.com/science/article/pii/S2352340915004114 |
collection |
DOAJ |
language |
English |
format |
Article |
sources |
DOAJ |
author |
A. Rosal-Vela A. Barroso E. Giménez S. García-Rodríguez V. Longobardo J. Postigo M. Iglesias A. Lario J. Merino R. Merino M. Zubiaur V. Sanz-Nebot J. Sancho |
spellingShingle |
A. Rosal-Vela A. Barroso E. Giménez S. García-Rodríguez V. Longobardo J. Postigo M. Iglesias A. Lario J. Merino R. Merino M. Zubiaur V. Sanz-Nebot J. Sancho Supporting data for the MS identification of distinct transferrin glycopeptide glycoforms and citrullinated peptides associated with inflammation or autoimmunity Data in Brief |
author_facet |
A. Rosal-Vela A. Barroso E. Giménez S. García-Rodríguez V. Longobardo J. Postigo M. Iglesias A. Lario J. Merino R. Merino M. Zubiaur V. Sanz-Nebot J. Sancho |
author_sort |
A. Rosal-Vela |
title |
Supporting data for the MS identification of distinct transferrin glycopeptide glycoforms and citrullinated peptides associated with inflammation or autoimmunity |
title_short |
Supporting data for the MS identification of distinct transferrin glycopeptide glycoforms and citrullinated peptides associated with inflammation or autoimmunity |
title_full |
Supporting data for the MS identification of distinct transferrin glycopeptide glycoforms and citrullinated peptides associated with inflammation or autoimmunity |
title_fullStr |
Supporting data for the MS identification of distinct transferrin glycopeptide glycoforms and citrullinated peptides associated with inflammation or autoimmunity |
title_full_unstemmed |
Supporting data for the MS identification of distinct transferrin glycopeptide glycoforms and citrullinated peptides associated with inflammation or autoimmunity |
title_sort |
supporting data for the ms identification of distinct transferrin glycopeptide glycoforms and citrullinated peptides associated with inflammation or autoimmunity |
publisher |
Elsevier |
series |
Data in Brief |
issn |
2352-3409 |
publishDate |
2016-03-01 |
description |
This data article presents the results of all the statistical analyses applied to the relative intensities of the detected 2D-DiGE protein spots for each of the 3 performed DiGE experiments. The data reveals specific subsets of protein spots with significant differences between WT and CD38-deficient mice with either Collagen-induced arthritis (CIA), or with chronic inflammation induced by CFA, or under steady-state conditions. This article also shows the MS data analyses that allowed the identification of the protein species which serve to discriminate the different experimental groups used in this study. Moreover, the article presents MS data on the citrullinated peptides linked to specific protein species that were generated in CIA+ or CFA-treated mice. Lastly, this data article provides MS data on the efficiency of the analyses of the transferrin (Tf) glycopeptide glycosylation pattern in spleen and serum from CIA+ mice and normal controls. The data supplied in this work is related to the research article entitled “identification of multiple transferrin species in spleen and serum from mice with collagen-induced arthritis which may reflect changes in transferrin glycosylation associated with disease activity: the role of CD38” [1]. All mass spectrometry data have been deposited to the ProteomeXchange Consortium via the PRIDE partner repository with identifiers PRIDE: http://www.ebi.ac.uk/pride/archive/projects/PXD002644, PRIDE: http://www.ebi.ac.uk/pride/archive/projects/PXD002643, PRIDE: http://www.ebi.ac.uk/pride/archive/projects/PXD003183 and PRIDE: http://www.ebi.ac.uk/pride/archive/projects/PXD003163. Keywords: Arthritis, Inflammation, Protein species, Transferrin, Glycosylation, CD38, Citrullination |
url |
http://www.sciencedirect.com/science/article/pii/S2352340915004114 |
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