Study of Classification of Breast Lesions Using Texture GLCM Features Obtained From the Raw Ultrasound Signal

Most of the methods of classification of breast lesions in ultrasound (US) images have been tested on B-mode images from the commercial equipment. The new possibility of further analysis of this problem showed up with the availability of a public database containing original raw radio frequency (RF)...

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Main Authors: Mariusz Nieniewski, Leszek J. Chmielewski
Format: Article
Language:English
Published: Slovenian Society for Stereology and Quantitative Image Analysis 2020-06-01
Series:Image Analysis and Stereology
Subjects:
Online Access:https://www.ias-iss.org/ojs/IAS/article/view/2113
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spelling doaj-f5aafdc11ae546df88de143e37bab8ef2020-11-25T02:31:20ZengSlovenian Society for Stereology and Quantitative Image AnalysisImage Analysis and Stereology1580-31391854-51652020-06-0139212914510.5566/ias.21131047Study of Classification of Breast Lesions Using Texture GLCM Features Obtained From the Raw Ultrasound SignalMariusz Nieniewski0Leszek J. Chmielewski1Faculty of Mathematics and Informatics, University of Lodz, Lodz, PolandInstitute of Information Technology, Warsaw Institute of Life Sciences - SGGW, Warsaw, PolandMost of the methods of classification of breast lesions in ultrasound (US) images have been tested on B-mode images from the commercial equipment. The new possibility of further analysis of this problem showed up with the availability of a public database containing original raw radio frequency (RF) signals. In particular, it appeared that the original texture might contain diagnostic information which could be modified in the typical image processing and which is more difficult to perceive than the details of lesion shape/contour. In this paper a detailed analysis of the lesion texture is conducted by means of the decision trees and logistic regression. The decision trees turned out useful mainly for selecting texture features to be employed in the stepwise logistic regression. The RF signals database of 200 breast lesions was used for testing the performance of the benign vs malignant lesion classifier. The Gray Level Cooccurrence Matrix (GLCM) was calculated with the vertical/horizontal offset of up to five pixels. For each of these matrices six features were calculated resulting in a total of 210 features. Using these features a sufficient number of decision trees were generated to calculate pseudo-Receiver Operating Characteristics (ROCs). The outcome of this process is a collection of generated trees for which the employed features are known. These features were then used for generating generalized linear model by means of stepwise logistic regression. The analyzed regression models included the coefficients of up-to-the second degree terms. The texture features were further completed by a single shape feature, that is tumor circularity. The automatic procedure for finding the exact mask of a lesion is also provided for the conditions when the acoustic shadowing makes it impossible to obtain the entire contour reliably and a half-contour has to be used. The selected logistic regression models gave ROCs with the Area Under Curve (AUC) of up to 0.83 and the 95 % confidence region (0.63 0.96). Analyzing classification results one comes to the conclusion that the tumor circularity, which is the most informative among shape/contour features, is not essential against the background of textural features. The reported study shows that a relatively straightforward procedure can be employed to obtain benign vs malignant classifier comparable with that originally used for the database of the raw RF signals and based on the more complicated segmentation of the parameter maps of homodyned K distribution.https://www.ias-iss.org/ojs/IAS/article/view/2113breast lesion classificationquantitative ultrasoundfeature selectiontexture analysisstepwise logistic regression
collection DOAJ
language English
format Article
sources DOAJ
author Mariusz Nieniewski
Leszek J. Chmielewski
spellingShingle Mariusz Nieniewski
Leszek J. Chmielewski
Study of Classification of Breast Lesions Using Texture GLCM Features Obtained From the Raw Ultrasound Signal
Image Analysis and Stereology
breast lesion classification
quantitative ultrasound
feature selection
texture analysis
stepwise logistic regression
author_facet Mariusz Nieniewski
Leszek J. Chmielewski
author_sort Mariusz Nieniewski
title Study of Classification of Breast Lesions Using Texture GLCM Features Obtained From the Raw Ultrasound Signal
title_short Study of Classification of Breast Lesions Using Texture GLCM Features Obtained From the Raw Ultrasound Signal
title_full Study of Classification of Breast Lesions Using Texture GLCM Features Obtained From the Raw Ultrasound Signal
title_fullStr Study of Classification of Breast Lesions Using Texture GLCM Features Obtained From the Raw Ultrasound Signal
title_full_unstemmed Study of Classification of Breast Lesions Using Texture GLCM Features Obtained From the Raw Ultrasound Signal
title_sort study of classification of breast lesions using texture glcm features obtained from the raw ultrasound signal
publisher Slovenian Society for Stereology and Quantitative Image Analysis
series Image Analysis and Stereology
issn 1580-3139
1854-5165
publishDate 2020-06-01
description Most of the methods of classification of breast lesions in ultrasound (US) images have been tested on B-mode images from the commercial equipment. The new possibility of further analysis of this problem showed up with the availability of a public database containing original raw radio frequency (RF) signals. In particular, it appeared that the original texture might contain diagnostic information which could be modified in the typical image processing and which is more difficult to perceive than the details of lesion shape/contour. In this paper a detailed analysis of the lesion texture is conducted by means of the decision trees and logistic regression. The decision trees turned out useful mainly for selecting texture features to be employed in the stepwise logistic regression. The RF signals database of 200 breast lesions was used for testing the performance of the benign vs malignant lesion classifier. The Gray Level Cooccurrence Matrix (GLCM) was calculated with the vertical/horizontal offset of up to five pixels. For each of these matrices six features were calculated resulting in a total of 210 features. Using these features a sufficient number of decision trees were generated to calculate pseudo-Receiver Operating Characteristics (ROCs). The outcome of this process is a collection of generated trees for which the employed features are known. These features were then used for generating generalized linear model by means of stepwise logistic regression. The analyzed regression models included the coefficients of up-to-the second degree terms. The texture features were further completed by a single shape feature, that is tumor circularity. The automatic procedure for finding the exact mask of a lesion is also provided for the conditions when the acoustic shadowing makes it impossible to obtain the entire contour reliably and a half-contour has to be used. The selected logistic regression models gave ROCs with the Area Under Curve (AUC) of up to 0.83 and the 95 % confidence region (0.63 0.96). Analyzing classification results one comes to the conclusion that the tumor circularity, which is the most informative among shape/contour features, is not essential against the background of textural features. The reported study shows that a relatively straightforward procedure can be employed to obtain benign vs malignant classifier comparable with that originally used for the database of the raw RF signals and based on the more complicated segmentation of the parameter maps of homodyned K distribution.
topic breast lesion classification
quantitative ultrasound
feature selection
texture analysis
stepwise logistic regression
url https://www.ias-iss.org/ojs/IAS/article/view/2113
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