Monitoring the Foliar Nutrients Status of Mango Using Spectroscopy-Based Spectral Indices and PLSR-Combined Machine Learning Models

Conventional methods of plant nutrient estimation for nutrient management need a huge number of leaf or tissue samples and extensive chemical analysis, which is time-consuming and expensive. Remote sensing is a viable tool to estimate the plant’s nutritional status to determine the appropriate amoun...

Full description

Bibliographic Details
Main Authors: Gopal Ramdas Mahajan, Bappa Das, Dayesh Murgaokar, Ittai Herrmann, Katja Berger, Rabi N. Sahoo, Kiran Patel, Ashwini Desai, Shaiesh Morajkar, Rahul M. Kulkarni
Format: Article
Language:English
Published: MDPI AG 2021-02-01
Series:Remote Sensing
Subjects:
Online Access:https://www.mdpi.com/2072-4292/13/4/641
id doaj-f9bda53d225f41678dd8485540a21d76
record_format Article
spelling doaj-f9bda53d225f41678dd8485540a21d762021-02-11T00:05:10ZengMDPI AGRemote Sensing2072-42922021-02-011364164110.3390/rs13040641Monitoring the Foliar Nutrients Status of Mango Using Spectroscopy-Based Spectral Indices and PLSR-Combined Machine Learning ModelsGopal Ramdas Mahajan0Bappa Das1Dayesh Murgaokar2Ittai Herrmann3Katja Berger4Rabi N. Sahoo5Kiran Patel6Ashwini Desai7Shaiesh Morajkar8Rahul M. Kulkarni9Natural Resource Management, ICAR–Central Coastal Agricultural Research Institute, Old Goa, Goa 403402, IndiaNatural Resource Management, ICAR–Central Coastal Agricultural Research Institute, Old Goa, Goa 403402, IndiaNatural Resource Management, ICAR–Central Coastal Agricultural Research Institute, Old Goa, Goa 403402, IndiaThe Plant Sensing Laboratory, The Robert H. Smith Institute for Plant Sciences and Genetics in Agriculture, The Robert H. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, P.O. Box 12, Rehovot 7610001, IsraelDepartment of Geography & Remote Sensing Ludwig-Maximilians-Universität München, 80333 Munich, GermanyDivision of Agricultural Physics, ICAR–Indian Agricultural Research Institute, New Delhi 110012, IndiaNatural Resource Management, ICAR–Central Coastal Agricultural Research Institute, Old Goa, Goa 403402, IndiaNatural Resource Management, ICAR–Central Coastal Agricultural Research Institute, Old Goa, Goa 403402, IndiaNatural Resource Management, ICAR–Central Coastal Agricultural Research Institute, Old Goa, Goa 403402, IndiaNatural Resource Management, ICAR–Central Coastal Agricultural Research Institute, Old Goa, Goa 403402, IndiaConventional methods of plant nutrient estimation for nutrient management need a huge number of leaf or tissue samples and extensive chemical analysis, which is time-consuming and expensive. Remote sensing is a viable tool to estimate the plant’s nutritional status to determine the appropriate amounts of fertilizer inputs. The aim of the study was to use remote sensing to characterize the foliar nutrient status of mango through the development of spectral indices, multivariate analysis, chemometrics, and machine learning modeling of the spectral data. A spectral database within the 350–1050 nm wavelength range of the leaf samples and leaf nutrients were analyzed for the development of spectral indices and multivariate model development. The normalized difference and ratio spectral indices and multivariate models–partial least square regression (PLSR), principal component regression, and support vector regression (SVR) were ineffective in predicting any of the leaf nutrients. An approach of using PLSR-combined machine learning models was found to be the best to predict most of the nutrients. Based on the independent validation performance and summed ranks, the best performing models were cubist (R<sup>2</sup> ≥ 0.91, the ratio of performance to deviation (RPD) ≥ 3.3, and the ratio of performance to interquartile distance (RPIQ) ≥ 3.71) for nitrogen, phosphorus, potassium, and zinc, SVR (R<sup>2</sup> ≥ 0.88, RPD ≥ 2.73, RPIQ ≥ 3.31) for calcium, iron, copper, boron, and elastic net (R<sup>2</sup> ≥ 0.95, RPD ≥ 4.47, RPIQ ≥ 6.11) for magnesium and sulfur. The results of the study revealed the potential of using hyperspectral remote sensing data for non-destructive estimation of mango leaf macro- and micro-nutrients. The developed approach is suggested to be employed within operational retrieval workflows for precision management of mango orchard nutrients.https://www.mdpi.com/2072-4292/13/4/641chemometricshyperspectral remote sensingmultivariate modelingprecision nutrient managementVNIR spectroscopy
collection DOAJ
language English
format Article
sources DOAJ
author Gopal Ramdas Mahajan
Bappa Das
Dayesh Murgaokar
Ittai Herrmann
Katja Berger
Rabi N. Sahoo
Kiran Patel
Ashwini Desai
Shaiesh Morajkar
Rahul M. Kulkarni
spellingShingle Gopal Ramdas Mahajan
Bappa Das
Dayesh Murgaokar
Ittai Herrmann
Katja Berger
Rabi N. Sahoo
Kiran Patel
Ashwini Desai
Shaiesh Morajkar
Rahul M. Kulkarni
Monitoring the Foliar Nutrients Status of Mango Using Spectroscopy-Based Spectral Indices and PLSR-Combined Machine Learning Models
Remote Sensing
chemometrics
hyperspectral remote sensing
multivariate modeling
precision nutrient management
VNIR spectroscopy
author_facet Gopal Ramdas Mahajan
Bappa Das
Dayesh Murgaokar
Ittai Herrmann
Katja Berger
Rabi N. Sahoo
Kiran Patel
Ashwini Desai
Shaiesh Morajkar
Rahul M. Kulkarni
author_sort Gopal Ramdas Mahajan
title Monitoring the Foliar Nutrients Status of Mango Using Spectroscopy-Based Spectral Indices and PLSR-Combined Machine Learning Models
title_short Monitoring the Foliar Nutrients Status of Mango Using Spectroscopy-Based Spectral Indices and PLSR-Combined Machine Learning Models
title_full Monitoring the Foliar Nutrients Status of Mango Using Spectroscopy-Based Spectral Indices and PLSR-Combined Machine Learning Models
title_fullStr Monitoring the Foliar Nutrients Status of Mango Using Spectroscopy-Based Spectral Indices and PLSR-Combined Machine Learning Models
title_full_unstemmed Monitoring the Foliar Nutrients Status of Mango Using Spectroscopy-Based Spectral Indices and PLSR-Combined Machine Learning Models
title_sort monitoring the foliar nutrients status of mango using spectroscopy-based spectral indices and plsr-combined machine learning models
publisher MDPI AG
series Remote Sensing
issn 2072-4292
publishDate 2021-02-01
description Conventional methods of plant nutrient estimation for nutrient management need a huge number of leaf or tissue samples and extensive chemical analysis, which is time-consuming and expensive. Remote sensing is a viable tool to estimate the plant’s nutritional status to determine the appropriate amounts of fertilizer inputs. The aim of the study was to use remote sensing to characterize the foliar nutrient status of mango through the development of spectral indices, multivariate analysis, chemometrics, and machine learning modeling of the spectral data. A spectral database within the 350–1050 nm wavelength range of the leaf samples and leaf nutrients were analyzed for the development of spectral indices and multivariate model development. The normalized difference and ratio spectral indices and multivariate models–partial least square regression (PLSR), principal component regression, and support vector regression (SVR) were ineffective in predicting any of the leaf nutrients. An approach of using PLSR-combined machine learning models was found to be the best to predict most of the nutrients. Based on the independent validation performance and summed ranks, the best performing models were cubist (R<sup>2</sup> ≥ 0.91, the ratio of performance to deviation (RPD) ≥ 3.3, and the ratio of performance to interquartile distance (RPIQ) ≥ 3.71) for nitrogen, phosphorus, potassium, and zinc, SVR (R<sup>2</sup> ≥ 0.88, RPD ≥ 2.73, RPIQ ≥ 3.31) for calcium, iron, copper, boron, and elastic net (R<sup>2</sup> ≥ 0.95, RPD ≥ 4.47, RPIQ ≥ 6.11) for magnesium and sulfur. The results of the study revealed the potential of using hyperspectral remote sensing data for non-destructive estimation of mango leaf macro- and micro-nutrients. The developed approach is suggested to be employed within operational retrieval workflows for precision management of mango orchard nutrients.
topic chemometrics
hyperspectral remote sensing
multivariate modeling
precision nutrient management
VNIR spectroscopy
url https://www.mdpi.com/2072-4292/13/4/641
work_keys_str_mv AT gopalramdasmahajan monitoringthefoliarnutrientsstatusofmangousingspectroscopybasedspectralindicesandplsrcombinedmachinelearningmodels
AT bappadas monitoringthefoliarnutrientsstatusofmangousingspectroscopybasedspectralindicesandplsrcombinedmachinelearningmodels
AT dayeshmurgaokar monitoringthefoliarnutrientsstatusofmangousingspectroscopybasedspectralindicesandplsrcombinedmachinelearningmodels
AT ittaiherrmann monitoringthefoliarnutrientsstatusofmangousingspectroscopybasedspectralindicesandplsrcombinedmachinelearningmodels
AT katjaberger monitoringthefoliarnutrientsstatusofmangousingspectroscopybasedspectralindicesandplsrcombinedmachinelearningmodels
AT rabinsahoo monitoringthefoliarnutrientsstatusofmangousingspectroscopybasedspectralindicesandplsrcombinedmachinelearningmodels
AT kiranpatel monitoringthefoliarnutrientsstatusofmangousingspectroscopybasedspectralindicesandplsrcombinedmachinelearningmodels
AT ashwinidesai monitoringthefoliarnutrientsstatusofmangousingspectroscopybasedspectralindicesandplsrcombinedmachinelearningmodels
AT shaieshmorajkar monitoringthefoliarnutrientsstatusofmangousingspectroscopybasedspectralindicesandplsrcombinedmachinelearningmodels
AT rahulmkulkarni monitoringthefoliarnutrientsstatusofmangousingspectroscopybasedspectralindicesandplsrcombinedmachinelearningmodels
_version_ 1724274795589140480