Eliminating Redundancies during Conversion of Paired-End Reads to Long Sequences

碩士 === 國立中正大學 === 資訊工程研究所 === 104 === Whole-genome shotgun sequences are now routinely generated by next generation sequencing technologies. However, a substantial amount of redundant sequences are included in the generated sequences. These redundant sequences greatly reduces the efficiency of subse...

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Main Authors:	PAN, SHIH-HONG, 潘世洪
Other Authors:	HUANG, YAO-TING
Format:	Others
Language:	zh-TW
Published:	2016
Online Access:	http://ndltd.ncl.edu.tw/handle/95817813903901728969

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record_format	oai_dc
spelling	ndltd-TW-103CCU003921152017-05-27T04:35:41Z http://ndltd.ncl.edu.tw/handle/95817813903901728969 Eliminating Redundancies during Conversion of Paired-End Reads to Long Sequences 在轉換成對序列為長序列過程中消除冗餘資訊 PAN, SHIH-HONG 潘世洪碩士國立中正大學資訊工程研究所 104 Whole-genome shotgun sequences are now routinely generated by next generation sequencing technologies. However, a substantial amount of redundant sequences are included in the generated sequences. These redundant sequences greatly reduces the efficiency of subsequent genome assembly. This paper presents a method for removing redundant sequences during conversion of paired-end reads to long sequence via a hash table, which aims to boost the speed of genome assembly. The experiemntal results indicate that this new method indeed improves the computational efficiency of previous method using a number of real data sets. key word: NGS, genome, long sequence, hash table, redundancy, eliminate HUANG, YAO-TING 黃耀廷 2016 學位論文 ; thesis 35 zh-TW
collection	NDLTD
language	zh-TW
format	Others
sources	NDLTD
description	碩士 === 國立中正大學 === 資訊工程研究所 === 104 === Whole-genome shotgun sequences are now routinely generated by next generation sequencing technologies. However, a substantial amount of redundant sequences are included in the generated sequences. These redundant sequences greatly reduces the efficiency of subsequent genome assembly. This paper presents a method for removing redundant sequences during conversion of paired-end reads to long sequence via a hash table, which aims to boost the speed of genome assembly. The experiemntal results indicate that this new method indeed improves the computational efficiency of previous method using a number of real data sets. key word: NGS, genome, long sequence, hash table, redundancy, eliminate
author2	HUANG, YAO-TING
author_facet	HUANG, YAO-TING PAN, SHIH-HONG 潘世洪
author	PAN, SHIH-HONG 潘世洪
spellingShingle	PAN, SHIH-HONG 潘世洪 Eliminating Redundancies during Conversion of Paired-End Reads to Long Sequences
author_sort	PAN, SHIH-HONG
title	Eliminating Redundancies during Conversion of Paired-End Reads to Long Sequences
title_short	Eliminating Redundancies during Conversion of Paired-End Reads to Long Sequences
title_full	Eliminating Redundancies during Conversion of Paired-End Reads to Long Sequences
title_fullStr	Eliminating Redundancies during Conversion of Paired-End Reads to Long Sequences
title_full_unstemmed	Eliminating Redundancies during Conversion of Paired-End Reads to Long Sequences
title_sort	eliminating redundancies during conversion of paired-end reads to long sequences
publishDate	2016
url	http://ndltd.ncl.edu.tw/handle/95817813903901728969
work_keys_str_mv	AT panshihhong eliminatingredundanciesduringconversionofpairedendreadstolongsequences AT pānshìhóng eliminatingredundanciesduringconversionofpairedendreadstolongsequences AT panshihhong zàizhuǎnhuànchéngduìxùlièwèizhǎngxùlièguòchéngzhōngxiāochúrǒngyúzīxùn AT pānshìhóng zàizhuǎnhuànchéngduìxùlièwèizhǎngxùlièguòchéngzhōngxiāochúrǒngyúzīxùn
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Eliminating Redundancies during Conversion of Paired-End Reads to Long Sequences

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