Phylogeny reconstruction of the Schoeneae (Cyperaceae) with a focus on southern African genera

In this study both plastid and nuclear DNA sequences (rbcL, trnL-trnF, rps16, ITS and ETS) were analysed. New sequences were added to the matrix from Verboom (2006). Parsimony method was used for phylogeny reconstruction. Morphological characters were then optimised on the parsimony tree using both...

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Main Author: Henning, Jessica
Other Authors: Muasya, A Muthama
Format: Others
Language:English
Published: University of Cape Town 2017
Subjects:
Online Access:http://hdl.handle.net/11427/25783
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spelling ndltd-netd.ac.za-oai-union.ndltd.org-uct-oai-localhost-11427-257832020-07-22T05:07:35Z Phylogeny reconstruction of the Schoeneae (Cyperaceae) with a focus on southern African genera Henning, Jessica Muasya, A Muthama Verboom, George Anthony Botany In this study both plastid and nuclear DNA sequences (rbcL, trnL-trnF, rps16, ITS and ETS) were analysed. New sequences were added to the matrix from Verboom (2006). Parsimony method was used for phylogeny reconstruction. Morphological characters were then optimised on the parsimony tree using both maximum likelihood and parsimony reconstruction. The Schoeneae is not monophyletic. Scleria may be included in the Schoeneae. Schoenus is probably not monophyletic as was suggested by morphological heterogeneity. It seems as though the Schoeneae ancestor probably had present leaf blades, leaves spread out wide along the stem and an open inflorescence. Further research needs to be done including the sampling of more taxa and more sequences. The monophyly of this tribe is still yet to be resolved. Lower taxonmic relationships need to be resolved further. 2017-10-25T08:24:34Z 2017-10-25T08:24:34Z 2008 2017-02-21T10:16:46Z Bachelor Thesis Honours BSc (Hons) http://hdl.handle.net/11427/25783 eng application/pdf University of Cape Town Faculty of Science Department of Biological Sciences
collection NDLTD
language English
format Others
sources NDLTD
topic Botany
spellingShingle Botany
Henning, Jessica
Phylogeny reconstruction of the Schoeneae (Cyperaceae) with a focus on southern African genera
description In this study both plastid and nuclear DNA sequences (rbcL, trnL-trnF, rps16, ITS and ETS) were analysed. New sequences were added to the matrix from Verboom (2006). Parsimony method was used for phylogeny reconstruction. Morphological characters were then optimised on the parsimony tree using both maximum likelihood and parsimony reconstruction. The Schoeneae is not monophyletic. Scleria may be included in the Schoeneae. Schoenus is probably not monophyletic as was suggested by morphological heterogeneity. It seems as though the Schoeneae ancestor probably had present leaf blades, leaves spread out wide along the stem and an open inflorescence. Further research needs to be done including the sampling of more taxa and more sequences. The monophyly of this tribe is still yet to be resolved. Lower taxonmic relationships need to be resolved further.
author2 Muasya, A Muthama
author_facet Muasya, A Muthama
Henning, Jessica
author Henning, Jessica
author_sort Henning, Jessica
title Phylogeny reconstruction of the Schoeneae (Cyperaceae) with a focus on southern African genera
title_short Phylogeny reconstruction of the Schoeneae (Cyperaceae) with a focus on southern African genera
title_full Phylogeny reconstruction of the Schoeneae (Cyperaceae) with a focus on southern African genera
title_fullStr Phylogeny reconstruction of the Schoeneae (Cyperaceae) with a focus on southern African genera
title_full_unstemmed Phylogeny reconstruction of the Schoeneae (Cyperaceae) with a focus on southern African genera
title_sort phylogeny reconstruction of the schoeneae (cyperaceae) with a focus on southern african genera
publisher University of Cape Town
publishDate 2017
url http://hdl.handle.net/11427/25783
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