Phylogeny reconstruction of the Schoeneae (Cyperaceae) with a focus on southern African genera
In this study both plastid and nuclear DNA sequences (rbcL, trnL-trnF, rps16, ITS and ETS) were analysed. New sequences were added to the matrix from Verboom (2006). Parsimony method was used for phylogeny reconstruction. Morphological characters were then optimised on the parsimony tree using both...
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Online Access: | http://hdl.handle.net/11427/25783 |
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ndltd-netd.ac.za-oai-union.ndltd.org-uct-oai-localhost-11427-257832020-07-22T05:07:35Z Phylogeny reconstruction of the Schoeneae (Cyperaceae) with a focus on southern African genera Henning, Jessica Muasya, A Muthama Verboom, George Anthony Botany In this study both plastid and nuclear DNA sequences (rbcL, trnL-trnF, rps16, ITS and ETS) were analysed. New sequences were added to the matrix from Verboom (2006). Parsimony method was used for phylogeny reconstruction. Morphological characters were then optimised on the parsimony tree using both maximum likelihood and parsimony reconstruction. The Schoeneae is not monophyletic. Scleria may be included in the Schoeneae. Schoenus is probably not monophyletic as was suggested by morphological heterogeneity. It seems as though the Schoeneae ancestor probably had present leaf blades, leaves spread out wide along the stem and an open inflorescence. Further research needs to be done including the sampling of more taxa and more sequences. The monophyly of this tribe is still yet to be resolved. Lower taxonmic relationships need to be resolved further. 2017-10-25T08:24:34Z 2017-10-25T08:24:34Z 2008 2017-02-21T10:16:46Z Bachelor Thesis Honours BSc (Hons) http://hdl.handle.net/11427/25783 eng application/pdf University of Cape Town Faculty of Science Department of Biological Sciences |
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English |
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Botany Henning, Jessica Phylogeny reconstruction of the Schoeneae (Cyperaceae) with a focus on southern African genera |
description |
In this study both plastid and nuclear DNA sequences (rbcL, trnL-trnF, rps16, ITS and ETS) were analysed. New sequences were added to the matrix from Verboom (2006). Parsimony method was used for phylogeny reconstruction. Morphological characters were then optimised on the parsimony tree using both maximum likelihood and parsimony reconstruction. The Schoeneae is not monophyletic. Scleria may be included in the Schoeneae. Schoenus is probably not monophyletic as was suggested by morphological heterogeneity. It seems as though the Schoeneae ancestor probably had present leaf blades, leaves spread out wide along the stem and an open inflorescence. Further research needs to be done including the sampling of more taxa and more sequences. The monophyly of this tribe is still yet to be resolved. Lower taxonmic relationships need to be resolved further. |
author2 |
Muasya, A Muthama |
author_facet |
Muasya, A Muthama Henning, Jessica |
author |
Henning, Jessica |
author_sort |
Henning, Jessica |
title |
Phylogeny reconstruction of the Schoeneae (Cyperaceae) with a focus on southern African genera |
title_short |
Phylogeny reconstruction of the Schoeneae (Cyperaceae) with a focus on southern African genera |
title_full |
Phylogeny reconstruction of the Schoeneae (Cyperaceae) with a focus on southern African genera |
title_fullStr |
Phylogeny reconstruction of the Schoeneae (Cyperaceae) with a focus on southern African genera |
title_full_unstemmed |
Phylogeny reconstruction of the Schoeneae (Cyperaceae) with a focus on southern African genera |
title_sort |
phylogeny reconstruction of the schoeneae (cyperaceae) with a focus on southern african genera |
publisher |
University of Cape Town |
publishDate |
2017 |
url |
http://hdl.handle.net/11427/25783 |
work_keys_str_mv |
AT henningjessica phylogenyreconstructionoftheschoeneaecyperaceaewithafocusonsouthernafricangenera |
_version_ |
1719330178803433472 |