The evaluation of Bcftools mpileup and GATK HaplotypeCaller for variant calling in non-human species

Identification of genetic variations is a central part of population and quantitative genomics studies based on high-throughput sequencing data. Even though popular variant callers such as Bcftools mpileup and GATK HaplotypeCaller were developed nearly 10 years ago, their performance is still largel...

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Bibliographic Details
Main Authors: Lefouili, M. (Author), Nam, K. (Author)
Format: Article
Language:English
Published: Nature Research 2022
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Online Access:View Fulltext in Publisher