PhyKIT: A broadly applicable UNIX shell toolkit for processing and analyzing phylogenomic data
Motivation: Diverse disciplines in biology process and analyze multiple sequence alignments (MSAs) and phylogenetic trees to evaluate their information content, infer evolutionary events and processes and predict gene function. However, automated processing of MSAs and trees remains a challenge due...
Main Authors: | Buida, T.J (Author), Labella, A.L (Author), Li, Y. (Author), Rokas, A. (Author), Shen, X.-X (Author), Steenwyk, J.L (Author) |
---|---|
Format: | Article |
Language: | English |
Published: |
Oxford University Press
2021
|
Subjects: | |
Online Access: | View Fulltext in Publisher |
Similar Items
-
ClipKIT: A multiple sequence alignment trimming software for accurate phylogenomic inference.
by: Jacob L Steenwyk, et al.
Published: (2020-12-01) -
Evolutionary Insight into the Trypanosomatidae Using Alignment-Free Phylogenomics of the Kinetoplast
by: Alexa Kaufer, et al.
Published: (2019-09-01) -
Novel scalable approaches for multiple sequence alignment and phylogenomic reconstruction
by: Mir arabbaygi, Siavash
Published: (2015) -
A Robust Phylogenomic Time Tree for Biotechnologically and Medically Important Fungi in the Genera Aspergillus and Penicillium
by: Jacob L. Steenwyk, et al.
Published: (2019-07-01) -
The synergistic effect of concatenation in phylogenomics: the case in Pantoea
by: Marike Palmer, et al.
Published: (2019-04-01)