Synthetic-to-real: instance segmentation of clinical cluster cells with unlabeled synthetic training

MOTIVATION: The presence of tumor cell clusters in pleural effusion may be a signal of cancer metastasis. The instance segmentation of single cell from cell clusters plays a pivotal role in cluster cell analysis. However, current cell segmentation methods perform poorly for cluster cells due to the...

Full description

Bibliographic Details
Main Authors: Chen, S. (Author), Jia, C. (Author), Shi, F. (Author), Sun, X. (Author), Wang, S. (Author), Zhao, M. (Author)
Format: Article
Language:English
Published: NLM (Medline) 2022
Online Access:View Fulltext in Publisher
LEADER 02007nam a2200193Ia 4500
001 10.1093-bioinformatics-btac219
008 220706s2022 CNT 000 0 und d
020 |a 13674811 (ISSN) 
245 1 0 |a Synthetic-to-real: instance segmentation of clinical cluster cells with unlabeled synthetic training 
260 0 |b NLM (Medline)  |c 2022 
856 |z View Fulltext in Publisher  |u https://doi.org/10.1093/bioinformatics/btac219 
520 3 |a MOTIVATION: The presence of tumor cell clusters in pleural effusion may be a signal of cancer metastasis. The instance segmentation of single cell from cell clusters plays a pivotal role in cluster cell analysis. However, current cell segmentation methods perform poorly for cluster cells due to the overlapping/touching characters of clusters, multiple instance properties of cells, and the poor generalization ability of the models. RESULTS: In this article, we propose a contour constraint instance segmentation framework (CC framework) for cluster cells based on a cluster cell combination enhancement module. The framework can accurately locate each instance from cluster cells and realize high-precision contour segmentation under a few samples. Specifically, we propose the contour attention constraint module to alleviate over- and under-segmentation among individual cell-instance boundaries. In addition, to evaluate the framework, we construct a pleural effusion cluster cell dataset including 197 high-quality samples. The quantitative results show that the numeric result of APmask is > 90%, a more than 10% increase compared with state-of-the-art semantic segmentation algorithms. From the qualitative results, we can observe that our method rarely has segmentation errors. © The Author(s) 2022. Published by Oxford University Press. 
700 1 |a Chen, S.  |e author 
700 1 |a Jia, C.  |e author 
700 1 |a Shi, F.  |e author 
700 1 |a Sun, X.  |e author 
700 1 |a Wang, S.  |e author 
700 1 |a Zhao, M.  |e author 
773 |t Bioinformatics (Oxford, England)