RapGreen, an interactive software and web package to explore and analyze phylogenetic trees

RapGreen, an interactive software and web package to explore and analyze phylogenetic trees

RapGreen is a modular software package targeted at scientists handling large datasets for phylogenetic analysis. Its primary function is the graphical visualization and exploration of large trees. In addition, RapGreen offers a tree pattern search function to seek evolutionary scenarios among large...

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Bibliographic Details
Main Authors: Bocs, S. (Author), De Lamotte, F. (Author), Dufayard, J.-F (Author), Guignon, V. (Author), Larivière, D. (Author), Louis, A. (Author), Oubda, N. (Author), Rouard, M. (Author), Ruiz, M. (Author)
Format: Article
Language:English
Published: Oxford University Press 2021
Subjects:
article
phylogenetic tree
rooting
software
Online Access:View Fulltext in Publisher
Description
Summary:RapGreen is a modular software package targeted at scientists handling large datasets for phylogenetic analysis. Its primary function is the graphical visualization and exploration of large trees. In addition, RapGreen offers a tree pattern search function to seek evolutionary scenarios among large collections of phylogenetic trees. Other functionalities include tree reconciliation with a given species tree: the detection of duplication or loss events during evolution and tree rooting. Last but not least, RapGreen features the ability to integrate heterogeneous data while visualizing and otherwise analyzing phylogenetic trees. © 2021 The Author(s) 2021. Published by Oxford University Press on behalf of NAR Genomics and Bioinformatics.
ISBN:26319268 (ISSN)
DOI:10.1093/nargab/lqab088

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