Revealing Potential Bioactive Compounds and Mechanisms of Lithospermum erythrorhizon against COVID-19 via Network Pharmacology Study

Lithospermum erythrorhizon (LE) is known in Korean traditional medicine for its potent therapeutic effect and antiviral activity. Currently, coronavirus (COVID-19) disease is a developing global pandemic that can cause pneumonia. A precise study of the infection and molecular pathway of COVID-19 is...

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Bibliographic Details
Main Authors: Adnan, M. (Author), Oh, K.-K (Author)
Format: Article
Language:English
Published: MDPI 2022
Subjects:
TNF
Online Access:View Fulltext in Publisher
LEADER 03092nam a2200253Ia 4500
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008 220706s2022 CNT 000 0 und d
020 |a 14673037 (ISSN) 
245 1 0 |a Revealing Potential Bioactive Compounds and Mechanisms of Lithospermum erythrorhizon against COVID-19 via Network Pharmacology Study 
260 0 |b MDPI  |c 2022 
856 |z View Fulltext in Publisher  |u https://doi.org/10.3390/cimb44050123 
520 3 |a Lithospermum erythrorhizon (LE) is known in Korean traditional medicine for its potent therapeutic effect and antiviral activity. Currently, coronavirus (COVID-19) disease is a developing global pandemic that can cause pneumonia. A precise study of the infection and molecular pathway of COVID-19 is therefore obviously important. The compounds of LE were identified from the Natural Product Activity and Species Source (NPASS) database and screened by SwissADME. The targets interacted with the compounds and were selected using the Similarity Ensemble Approach (SEA) and Swiss Target Prediction (STP) methods. PubChem was used to classify targets linked to COVID-19. The protein–protein interaction (PPI) networks and signaling pathways–targets–bioac-tive compounds (STB) networks were constructed by RPackage. Lastly, we performed the molecular docking test (MDT) to verify the binding affinity between significant complexes through AutoDock 1.5.6. The Natural Product Activity and Species Source (NPASS) revealed a total of 82 compounds from LE, which interacted with 1262 targets (SEA and STP), and 249 overlapping targets were iden-tified. The 19 final overlapping targets from the 249 targets and 356 COVID-19 targets were ulti-mately selected. A bubble chart exhibited that inhibition of the MAPK signaling pathway could be a key mechanism of LE on COVID-19. The three key targets (RELA, TNF, and VEGFA) directly related to the MAPK signaling pathway, and methyl 4-prenyloxycinnamate, tormentic acid, and eugenol were related to each target and had the most stable binding affinity. The three bioactive effects on the three key targets might be synergistic effects to alleviate symptoms of COVID-19 in-fection. Overall, this study shows that LE can play a role in alleviating COVID-19 symptoms, revealing that the three components (bioactive compounds, targets, and mechanism) are the most significant elements of LE against COVID-19. However, the promising mechanism of LE on COVID-19 is only predicted on the basis of mining data; the efficacy of the chemical compounds and the affinity between compounds and the targets in experiment was ignored, which should be further substantiated through clinical trials. © 2022 by the authors. Licensee MDPI, Basel, Switzerland. 
650 0 4 |a COVID-19 
650 0 4 |a eugenol 
650 0 4 |a Lithospermum erythrorhizon 
650 0 4 |a MAPK signaling pathway 
650 0 4 |a methyl 4-prenyloxycinnamate 
650 0 4 |a RELA 
650 0 4 |a TNF 
650 0 4 |a tormentic acid 
650 0 4 |a VEGFA 
700 1 0 |a Adnan, M.  |e author 
700 1 0 |a Oh, K.-K.  |e author 
773 |t Current Issues in Molecular Biology