Chromatin-state discovery and genome annotation with ChromHMM

by Ernst, Jason, Kellis, Manolis
Published 2020

A User's Guide to the Encyclopedia of DNA Elements (ENCODE)

by Bernstein, Bradley E., Epstein, Charles B., Shoresh, Noam, Ernst, Jason, Mikkelsen, Tarjei Sigurd, Kheradpour, Pouya, Zhang, Xiaolan, Wang, Li, Issner, Robbyn, Coyne, Michael J., Durham, Timothy, Ku, Manching, Truong, Thanh, Ward, Lucas D., Altshuler, Robert Charles, Lin, Michael F., Kellis, Manolis, ENCODE Project Consortium
Published 2011

Genome-scale high-resolution mapping of activating and repressive nucleotides in regulatory regions

by Ernst, Jason, Melnikov, Alexandre, Zhang, Xiaolan, Wang, Li, Rogov, Peter L, Mikkelsen, Tarjei, Kellis, Manolis
Published 2017