Integrating the OHIF Viewer into XNAT: Achievements, Challenges and Prospects for Quantitative Imaging Studies

by Aboagye, E.O, Al Sa’D, M., Alle, S., Alpert, K., Cho, W., Darcy, J., Doran, S.J, El Harouni, A., Genereaux, B., Harris, G.J, Koh, D.-M, Marcus, D., Petts, J.A, Sala, E., Sanchez, L.E, Ziegler, E.
Published 2022

WormBase in 2022-data, processes, and tools for analyzing Caenorhabditis elegans

by Arnaboldi, V., Becerra, A., Berriman, M., Cain, S., Chan, J., Chen, W.J, Cho, J., da Veiga Beltrame, E., Davis, P., Diamantakis, S., Gao, S., Grigoriadis, D., Grove, C.A, Harris, T.W, Howe, K.L, Kishore, R., Le, T., Lee, R.Y.N, Luypaert, M., Müller, H.-M, Nakamura, C., Nuin, P., Paulini, M., Quinton-Tulloch, M., Raciti, D., Rodgers, F.H, Russell, M., Schedl, T., Schindelman, G., Singh, A., Stein, L., Sternberg, P.W, Stickland, T., Van Auken, K., Wang, Q., Williams, G., Wright, A.J, Yook, K., Zarowiecki, M.
Published 2022

PDBeCIF: an open-source mmCIF/CIF parsing and processing package

by Anyango, S., Dana, J.M, Keller, P., Pravda, L., van Ginkel, G., Varadi, M., Velankar, S.
Published 2021

PS3: The Pheno-Synthesis software suite for integration and analysis of multi-scale, multi-platform phenological data

by Browning, D.M, Chang, T., Crimmins, T.M, Duffy, K.A, Enns, K.D, Friesz, A.M, Gerst, K.L, Jones, K.D, Landau, V.A, Maiersperger, T.K, Marsh, R.L, Miller, B.W, Morisette, J.T, Richardson, A.D, Weltzin, J.F, Zachmann, L.J
Published 2021

IsomiR_Window: a system for analyzing small-RNA-seq data in an integrative and user-friendly manner

by Amaral, A.J, Carmo, M.B, Ferreira, A., Ferreira, B., Gama-Carvalho, M., Vasconcelos, A.M, Viegas, I.
Published 2021

Processing pipeline for image reconstructed fNIRS analysis using both MRI templates and individual anatomy

by Eggebrecht, A.T, Forbes, S.H, Magnotta, V.A, Spencer, J.P, Wijeakumar, S.
Published 2021

Comparison of methods for end-to-end co-optimization of optical systems and image processing with commercial lens design software

by Fontbonne, A., Goudail, F., Sauer, H.
Published 2022

IOAT: an interactive tool for statistical analysis of omics data and clinical data

by Cai, H., Liu, F., Wu, L.
Published 2021

FASTAFS: file system virtualisation of random access compressed FASTA files

by Hoogstrate, Y., Jenster, G.W, Werken, H.J.G
Published 2021

TAGOPSIN: collating taxa-specific gene and protein functional and structural information

by Bundhoo, E., Ghoorah, A.W, Jaufeerally-Fakim, Y.
Published 2021

MAPS: machine-assisted phenotype scoring enables rapid functional assessment of genetic variants by high-content microscopy

by Chao, J.T, Loewen, C.J.R, Roskelley, C.D
Published 2021

Addressing the data guardian and geospatial scientist collaborator dilemma: How to share health records for spatial analysis while maintaining patient confidentiality

by Ajayakumar, J., Curtis, A.J, Curtis, J.
Published 2019

A thousand studies for the price of one: Accelerating psychological science with Pushkin

by de Leeuw, J.R, Goodman, N.D, Hartshorne, J.K, Jennings, M., O’Donnell, T.J
Published 2019

Pheniqs 2.0: accurate, high-performance Bayesian decoding and confidence estimation for combinatorial barcode indexing

by Galanti, L., Gunsalus, K.C, Shasha, D.
Published 2021

FiCoS: A fine-grained and coarse-grained GPU-powered deterministic simulator for biochemical networks

by Besozzi, D., Capitoli, G., Cazzaniga, P., Mauri, G., Nobile, M.S, Rundo, L., Spolaor, S., Tangherloni, A.
Published 2021

EDLMFC: an ensemble deep learning framework with multi-scale features combination for ncRNA–protein interaction prediction

by Gong, W., Huang, X., Liu, Y., Tan, J., Wang, J., Wang, M., Zhao, Y.
Published 2021

NDEx: Accessing Network Models and Streamlining Network Biology Workflows

by Chen, J., Churas, C., Liu, S., Ono, K., Otasek, D., Pillich, R.T, Pratt, D.
Published 2021

StrVCTVRE: A supervised learning method to predict the pathogenicity of human genome structural variants

by Brenner, S.E, Hu, Z., Sharo, A.G, Sunyaev, S.R
Published 2022

Immunopeptidomics toolkit library (IPTK): a python-based modular toolbox for analyzing immunopeptidomics data

by Bacher, P., Degenhardt, F., ElAbd, H., Franke, A., Kamps, A.-K, Koudelka, T., Lenz, T.L, Tholey, A., Wendorff, M.
Published 2021

SpinSPJ: a novel NMR scripting system to implement artificial intelligence and advanced applications

by Chen, Z., Liu, Z., Song, K.
Published 2021