Functional characterisation of the amyotrophic lateral sclerosis risk locus GPX3/TNIP1

by Bye, C.R, Cheng, F.-F, Garton, F.C, Giacomotto, J., Gusev, A., Henders, A.K, Henderson, R.D, Kabashi, E., Kiernan, M.C, Mathers, S., McCombe, P.A, McRae, A.F, Nabais, M.F, Needham, M., Ngo, S.T, Ophoff, R., Qi, T., Restuadi, R., Schultz, D., Steyn, F.J, Thompson, M.J, Turner, B.J, van den Berg, L.H, van Rheenen, W., Veldink, J.H, Wallace, L., Wray, N.R, Wu, Y., Zaitlen, N., Ziser, L.
Published 2022

GENPPI: standalone software for creating protein interaction networks from genomes

by Anjos, W.F, Azevedo, V.A, Lanes, G.C, Santos, A.R
Published 2021

Comparative analysis of aneurysm subtypes associated genes based on protein–protein interaction network

by Cui, Q., Sun, R., Zhou, Y.
Published 2021

Five crucial prognostic-related autophagy genes stratified female breast cancer patients aged 40–60 years

by Li, P., Li, X., Liu, J., Sun, Y., Zhang, H.
Published 2021

PangenomeNet: a pan-genome-based network reveals functional modules on antimicrobial resistome for Escherichia coli strains

by Her, H.-L, Lin, P.-T, Wu, Y.-W
Published 2021

Identifying stress responsive genes using overlapping communities in co-expression networks

by Finke, J., Riccio-Rengifo, C., Rocha, C.
Published 2021

Using multi-layer perceptron to identify origins of replication in eukaryotes via informative features

by Fan, Y., Wang, W.
Published 2021

Improved detection of disease-associated gut microbes using 16S sequence-based biomarkers

by Chrisman, B.S, David, M., DeSantis, T.Z, Iwai, S., Jung, J.-Y, Paskov, K.M, Stockham, N., Tataru, C., Varma, M., Wall, D.P, Washington, P.Y
Published 2021

rKOMICS: an R package for processing mitochondrial minicircle assemblies in population-scale genome projects

by Geerts, M., Schnaufer, A., Van den Broeck, F.
Published 2021

Boolean factor graph model for biological systems: the yeast cell-cycle network

by Eslami, A., Kotiang, S.
Published 2021

DELEAT: gene essentiality prediction and deletion design for bacterial genome reduction

by Garrote-Sánchez, E., Gil, R., Solana, J.
Published 2021

Conifer: clonal tree inference for tumor heterogeneity with single-cell and bulk sequencing data

by Baghaarabani, L., Foroughmand-Araabi, M.-H, Goliaei, B., Goliaei, S., Shariatpanahi, S.P
Published 2021

airpg: automatically accessing the inverted repeats of archived plastid genomes

by Gruenstaeudl, M., Mehl, T.
Published 2021

Ribovore: ribosomal RNA sequence analysis for GenBank submissions and database curation

by Johnston, A., Karsch-Mizrachi, I., McVeigh, R., Nawrocki, E.P, Robbertse, B., Schäffer, A.A, Schoch, C.L, Underwood, B.A
Published 2021

A machine learning framework that integrates multi-omics data predicts cancer-related LncRNAs

by Shen, Z., Sun, T., Yuan, L., Zhao, J.
Published 2021

NUCOME: A comprehensive database of nucleosome organization referenced landscapes in mammalian genomes

by Chen, X., Liu, G., Yang, H., Zhang, Y.
Published 2021

Simulation study and comparative evaluation of viral contiguous sequence identification tools

by Glickman, C., Hendrix, J., Strong, M.
Published 2021

NoRCE: non-coding RNA sets cis enrichment tool

by Nabi, A., Olgun, G., Tastan, O.
Published 2021

Lantern: an integrative repository of functional annotations for lncRNAs in the human genome

by Daulatabad, S.V, Janga, S.C, Srivastava, R.
Published 2021

A workflow to identify novel proteins based on the direct mapping of peptide-spectrum-matches to genomic locations

by Anders, J., Haange, S.-B, Jehmlich, N., Petruschke, H., Stadler, P.F, von Bergen, M.
Published 2021